lociWidth: Accessor Method for the 'lociWidth' slot in a...
In patrickCNMartin/ChIPanalyserDev: ChIPanalyser: Predicting Transcription Factor Binding Sites
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Setter Method for the lociWidth slot in a
parameterOptions object
Usage
1
lociWidth(object)
Arguments
object
object is parameterOptions object
Details
When using the processingChIP function, the provided ChIP
scores will be split into bins of a given size. lociWidth determines the Size
of that bin. Default is set at 20 000 bp.
This means that the ChIP profiles provided will be split into bins of 20 000 bp
over the entire profile provided if no loci of interest is provided.
Value
Returns the value assigned to the lociWidth slot in a
parameterOptions object.
Author(s)
Patrick C. N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1
2
3
4
5
6
7
# Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions(lociWidth=20000)
#Accessing new Value for lociWidth
lociWidth(GPP)
patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Description Usage Arguments Details Value Author(s) References Examples
Description
Setter Method for the lociWidth slot in a
parameterOptions object
Usage
1 | lociWidth(object)
|
Arguments
object |
|
Details
When using the processingChIP function, the provided ChIP
scores will be split into bins of a given size. lociWidth determines the Size
of that bin. Default is set at 20 000 bp.
This means that the ChIP profiles provided will be split into bins of 20 000 bp
over the entire profile provided if no loci of interest is provided.
Value
Returns the value assigned to the lociWidth slot in a
parameterOptions object.
Author(s)
Patrick C. N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1 2 3 4 5 6 7 | # Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions(lociWidth=20000)
#Accessing new Value for lociWidth
lociWidth(GPP)
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
Embedding an R snippet on your website
Add the following code to your website.
For more information on customizing the embed code, read Embedding Snippets.