maxSignal: Accessor method for the 'maxSignal' slot in a...

Description Usage Arguments Details Value Author(s) References Examples

Description

Accessor method for the maxSignal slot in a parameterOptions object.

Usage

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maxSignal(object)

Arguments

object

object is a parameterOptions object.

Details

In the context of ChIPanalyser, maxSignal represents the maximum normalised ChIP-Seq signal of a given Transcription factor (or DNA binding protein). Although, A default value of 1 has been assigned to this slot, we strongly recommend to tailor this value accordingly. We strongly encourage to set values when building a parameterOptions object.

Value

Returns the value assigned to the maxSignal slot in a parameterOptions object.

Author(s)

Patrick C.N. Martin <p.martin@essex.ac.uk>

References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

Examples

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# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
maxSignal(OPP)

patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.