noOfSites_-: Setter Method for the 'noOfSites' slot in a...
In patrickCNMartin/ChIPanalyserDev: ChIPanalyser: Predicting Transcription Factor Binding Sites
Description
Usage
Arguments
Details
Value
Author(s)
References
Examples
Description
Setter Method for the noOfSites slot in a
parameterOptions object.
Usage
1
noOfSites(object) <- value
Arguments
object
object is a parameterOptions object.
value
value is a positive integer that will be assigned to the
noOfSites slot.
Details
While computing Position Weight Matricies (PWM) from
Position Frequency Matricies (PFM), it is possible to restrict the number
of sites that will be used to compute the PWM. The default is set at "all".
In this case, all sites will be used to compute the PWM.
Value
Returns a parameterOptions object with an updated
value for the noOfSites slot.
Author(s)
Patrick C.N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription
factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1
2
3
4
5
6
7
# Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions(noOfSites=0)
#Setting new Value for naturalLog
noOfSites(GPP) <- 8
patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.
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Description Usage Arguments Details Value Author(s) References Examples
Description
Setter Method for the noOfSites slot in a
parameterOptions object.
Usage
1 | noOfSites(object) <- value
|
Arguments
object |
|
value |
|
Details
While computing Position Weight Matricies (PWM) from Position Frequency Matricies (PFM), it is possible to restrict the number of sites that will be used to compute the PWM. The default is set at "all". In this case, all sites will be used to compute the PWM.
Value
Returns a parameterOptions object with an updated
value for the noOfSites slot.
Author(s)
Patrick C.N. Martin <p.martin@essex.ac.uk>
References
Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.
Examples
1 2 3 4 5 6 7 | # Loading data
data(ChIPanalyserData)
#Building data objects
GPP <- parameterOptions(noOfSites=0)
#Setting new Value for naturalLog
noOfSites(GPP) <- 8
|
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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