ploidy: Accessor method for the 'ploidy' slot in a 'parameterOptions'...

Description Usage Arguments Details Value Author(s) References Examples

Description

Accessor method for the ploidy slot in a parameterOptions object

Usage

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ploidy(object)

Arguments

object

object is a parameterOptions object

Details

Default value for ploidy is set a 2. It should be mentioned that ChIPanalyser is based on a model that also considers the ploidy of the organism of interest however this only considers simple polyploidy (or haploidy). The model does not consider hybrids such as wheat.

Value

Returns the value assigned to the ploidy slot in a parameterOptions object

Author(s)

Patrick C. N. Martin <pm16057@essex.ac.uk>

References

Zabet NR, Adryan B (2015) Estimating binding properties of transcription factors from genome-wide binding profiles. Nucleic Acids Res., 43, 84–94.

Examples

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# Building parameterOptions object
OPP <- parameterOptions()
#Setting new Value for maxSignal
ploidy(OPP)

patrickCNMartin/ChIPanalyserDev documentation built on Nov. 14, 2019, 4:39 p.m.