selectPlants: Extract measures from seed object

Description Usage Arguments Value

View source: R/filter.R

Description

Extract measures from seed object

Usage

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selectPlants(
  seed,
  measure = c("NPQ", "XE", "EF", "OE"),
  method = c("MSE", "RSS"),
  threshold = c(0.05, 0.5),
  cores = 1
)

Arguments

seed

a seed object

measure

which measure should be used to select plants/samples ("NPQ","XE","EF","OE")

method

if models have been computed, descirbes which method should be used to assess goodness of fit ("MSE","RSS")

threshold

if models have been computed, threshold at which samples should be removed. Anything above threshold is removed.

cores

number of cores used for selecting plants

Value

Seed object with filtered data


patrickCNMartin/lighteR documentation built on Jan. 29, 2021, 1:30 p.m.