convert2hugo: convert ENSGids to HUGO gene names
In patterja/kbmtl: KBMTL Drug Prediction
Description
Usage
Arguments
Value
Author(s)
Description
RNA matrix of ENSG identifiers converted and aggregated (summed) to HUGO
identifiers using targetid file from GENCODE v24.
Usage
1
2
convert2hugo(mat, targetid_file = "target_id.txt",
protein_coding = TRUE)
Arguments
mat
(matrix) columns are sample names, rows are ENSG IDs
targetid_file
(char string) path to target_id.txt
protein_coding
(logical): filter for protein coding only and then aggregate to HUGO
Value
aggregated matrix with HUGO IDs
Author(s)
Janice Patterson
patterja/kbmtl documentation built on Oct. 6, 2020, 1:16 p.m.
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Description Usage Arguments Value Author(s)
Description
RNA matrix of ENSG identifiers converted and aggregated (summed) to HUGO identifiers using targetid file from GENCODE v24.
Usage
1 2 | convert2hugo(mat, targetid_file = "target_id.txt",
protein_coding = TRUE)
|
Arguments
mat |
(matrix) columns are sample names, rows are ENSG IDs |
targetid_file |
(char string) path to target_id.txt |
protein_coding |
(logical): filter for protein coding only and then aggregate to HUGO |
Value
aggregated matrix with HUGO IDs
Author(s)
Janice Patterson
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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