apps/v1/installPrerequisites.R

In paul-shannon/ProteomicsNavigator: Proteomics Navigator

printf <- function(...) print(noquote(sprintf(...)))
install.packages("BiocManager", repos="https://cran.rstudio.com")
biocGet <- function(pkgs){
   library(BiocManager)
   BiocManager::install(pkgs, update=FALSE)
   }


code.pkgs <- c("shinydashboard",
               "DT",
               "shinyjs",
               "shinyWidgets",
               "shinyBS",
               "later",
               "ggplot2"
               )

for(code.pkg in code.pkgs){
   suppressWarnings(
      needed <- !require(code.pkg, character.only=TRUE, lib.loc=my.user.library, quiet=TRUE)
      )
   printf("%s needed? %s", code.pkg, needed)
   if(needed)
      biocGet(code.pkg)
   } # for