RCyjs-class: Create an RCyjs object

Description Usage Arguments Value Examples

Description

The RCyjs class provides an R interface to cytoscape.js, a rich, interactive, full-featured, javascript network (graph) library. One constructs an RCyjs instance on a specified port (default 9000), the browser code is loaded, and a websocket connection opened.

Usage

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RCyjs(portRange = 16000:16100, title = "RCyjs", graph = graphNEL(),
  quiet = TRUE)

Arguments

portRange

The constructor looks for a free websocket port in this range. 16000:16100 by default

title

Used for the web browser window, "RCyjs" by default

graph

a Biocondcutor graphNEL object

quiet

A logical variable controlling verbosity during execution

Value

An object of the RCyjs class

Examples

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if(interactive()){
  g <- simpleDemoGraph()
  rcy <- RCyjs(title="rcyjs demo", graph=g)
  setNodeLabelRule(rcy, "label");
  setNodeSizeRule(rcy, "count", c(0, 30, 110), c(20, 50, 100));
  setNodeColorRule(rcy, "count", c(0, 100), c(colors$green, colors$red), mode="interpolate")
  redraw(rcy)
  layout(rcy, "cose")
  }

paul-shannon/RCyjs documentation built on May 28, 2019, 1:15 p.m.