diffT: Compute diffT score between two TAD calls
In paulasoler/HTADs: Call hierarchical TADs
diffT R Documentation
Compute diffT score between two TAD calls
Description
Compute diffT score between two TAD calls
Usage
diffT(bed_x, bed_y)
Arguments
'bed_x, bed_y'
two 'data.frame's with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins.
Examples
control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
case <- read.table(system.file("extdata", "case.bed", package = "TADpole"))
difft_control_case <- diffT(control, case)
paulasoler/HTADs documentation built on July 17, 2022, 8:59 a.m.
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| diffT | R Documentation |
Compute diffT score between two TAD calls
Description
Compute diffT score between two TAD calls
Usage
diffT(bed_x, bed_y)
Arguments
'bed_x, bed_y' |
two 'data.frame's with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins. |
Examples
control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
case <- read.table(system.file("extdata", "case.bed", package = "TADpole"))
difft_control_case <- diffT(control, case)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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