random_bed: Compute a random set of TAD border coordinates from a sample...
In paulasoler/HTADs: Call hierarchical TADs
random_bed R Documentation
Compute a random set of TAD border coordinates from a sample partition
Description
Compute a random set of TAD border coordinates from a sample partition
Usage
random_bed(bed, bad_columns = NULL)
Arguments
'bed'
a 'data.frame' with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins.
'bad_columns'
a numeric 'vector' with the positions of the bad columns. TAD borders will not be placed on bad columns. Default value of 'NULL' means no bad columns will be introduced.
Examples
control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
random_coords <- random_bed(control)
paulasoler/HTADs documentation built on July 17, 2022, 8:59 a.m.
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| random_bed | R Documentation |
Compute a random set of TAD border coordinates from a sample partition
Description
Compute a random set of TAD border coordinates from a sample partition
Usage
random_bed(bed, bad_columns = NULL)
Arguments
'bed' |
a 'data.frame' with a BED-like format with 3 columns: chromosome, start and end coordinates of each TAD, in bins. |
'bad_columns' |
a numeric 'vector' with the positions of the bad columns. TAD borders will not be placed on bad columns. Default value of 'NULL' means no bad columns will be introduced. |
Examples
control <- read.table(system.file("extdata", "control.bed", package = "TADpole"))
random_coords <- random_bed(control)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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