get_ensembl_data: Get the ensembl data frame requested by 'type'.

In paulklemm/snrgo: GO-Term analysis for Sonar

Description

Since the download requires some minutes, files are cached in the installation folder of the package. Therefore, loading a gene dataset can take some time when done for the first time. The data frames are stored in individual folders to make loading more efficient

Usage

get_ensembl_data(type = "gene_and_go",
  ensembl_dataset = "mmusculus_gene_ensembl", version = "current")

Arguments

type	Ensembl data to return. Has to be 'gene_and_go', 'transcripts_and_go' or 'go_description'
ensembl_dataset	Ensembl dataset name specifying the species
ensembl_version	Ensembl version. Defaults to 'current'

Value

Dataframe reqested by type

paulklemm/snrgo documentation built on May 4, 2019, 4:22 p.m.