filterCpGs: Filter unreliable probes

In paulmanser/fresco: Flexible local regression using empirically selected control probes

Description

Filter unreliable probes

Usage

filterCpGs(object, removeChromosomes = NULL, filterCrossHyb = TRUE,
  filterNA = TRUE, filterSNP = TRUE, minorAlleleFreq = 0,
  population = "All")

Arguments

object	MethylSet or GenomicRatioSet object
removeChromosomes	A character string of chromoses to remove
filterCrossHyb	Filter autosomal probes that cross-hybridize to sex chromosomes?
filterNA	Filter probes containing at least one NA?
filterSNP	Filter probes containing SNPs?
minorAlleleFreq	What is the largest minor allele frequency we are willing to tolerate?
population	What population should be used to compute minor allele frequency? Default is 'All'

paulmanser/fresco documentation built on May 24, 2019, 8:45 p.m.