point_Hexp: Estimation of expected heterozygosity
In pblischak/polyfreqs: Bayesian Population Genomics in Autopolyploids

Description Usage Arguments Details Value References

INTERNAL: Estimates a posterior distribution for the per locus expected heterozygosity using the unbiased estimator of Hardy (2015) and the poterior samples of allele frequencies calculated by polyfreqs.

1	point_Hexp(p_samp, genotypes, ploidy)

`p_samp`	A posterior sample of allele frequencies from `polyfreqs`.
`genotypes`	Matrix of genotypes sampled during MCMC.
`ploidy`	The ploidy level of individuals in the population (must be >= 2).

Posterior distributions for the per locus expected heterozygosity are automatically calculated and returned by the polyfreqs function.

Returns the per locus estimates of expected heterozygosity (per_locus_Hexp)

Hardy, OJ. 2015. Population genetics of autopolyploids under a mixed mating model and the estimation of selfing rate. Molecular Ecology Resources, doi: 10.1111/1755-0998.12431.

pblischak/polyfreqs documentation built on May 24, 2019, 10:37 p.m.