simple_freqs: Point estimation of allele frequencies based on read counts
In pblischak/polyfreqs: Bayesian Population Genomics in Autopolyploids
Description
Usage
Arguments
Value
Author(s)
Description
simple_freqs estimates allele frequencies based on read count ratios.
Usage
1
simple_freqs(tM, rM)
Arguments
tM
Total reads matrix: matrix containing the total number of reads mapping to each locus for each individual.
rM
Reference reads marix: matrix containing the number of reference reads mapping to each locus for each individual.
Value
A vector of allele frequencies, one for each locus. Named allele_freqs_hat.
Author(s)
Paul Blischak
pblischak/polyfreqs documentation built on May 24, 2019, 10:37 p.m.
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Description Usage Arguments Value Author(s)
Description
simple_freqs estimates allele frequencies based on read count ratios.
Usage
1 | simple_freqs(tM, rM)
|
Arguments
tM |
Total reads matrix: matrix containing the total number of reads mapping to each locus for each individual. |
rM |
Reference reads marix: matrix containing the number of reference reads mapping to each locus for each individual. |
Value
A vector of allele frequencies, one for each locus. Named allele_freqs_hat.
Author(s)
Paul Blischak
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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