Description Usage Arguments Value Author(s)
simple_freqs
estimates allele frequencies based on read count ratios.
1 | simple_freqs(tM, rM)
|
tM |
Total reads matrix: matrix containing the total number of reads mapping to each locus for each individual. |
rM |
Reference reads marix: matrix containing the number of reference reads mapping to each locus for each individual. |
A vector of allele frequencies, one for each locus. Named allele_freqs_hat
.
Paul Blischak
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