Fig6.6: Reproduce Figure 6.6
In pbreheny/hdrm: High-Dimensional Regression Modeling
Fig6.6 R Documentation
Reproduce Figure 6.6
Description
Reproduces Figure 6.6 from the book. If you specify any options, your results may look different.
Usage
Fig6.6(fit)
Arguments
fit
ncvreg fit to the TCGA data; see examples
Examples
attach_data(brca1)
fit <- ncvreg(X, y, penalty="lasso")
obj <- mfdr(fit)
tail(subset(obj, mFDR < .1))
plot(obj)
# Lasso figure
Fig6.6(fit)
# An MCP figure
fit <- ncvreg(X, y)
Fig6.6(fit)
pbreheny/hdrm documentation built on March 29, 2025, 5:18 a.m.
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| Fig6.6 | R Documentation |
Reproduce Figure 6.6
Description
Reproduces Figure 6.6 from the book. If you specify any options, your results may look different.
Usage
Fig6.6(fit)
Arguments
fit |
|
Examples
attach_data(brca1)
fit <- ncvreg(X, y, penalty="lasso")
obj <- mfdr(fit)
tail(subset(obj, mFDR < .1))
plot(obj)
# Lasso figure
Fig6.6(fit)
# An MCP figure
fit <- ncvreg(X, y)
Fig6.6(fit)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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