Files in pbs-assess/PACea
An R package of Pacific ecosystem information to help facilitate an ecosystem approach to fisheries management
.Rbuildignore
.github/codecov.yml
.github/workflows/R-CMD-check.yaml
.github/workflows/github-repo-stats.yml
.github/workflows/test-coverage.yaml
.gitignore
DESCRIPTION
LICENSE
LICENSE.md
NAMESPACE
NEWS.md
PACea.Rproj
R-temp/3d-printing/hake-biomass-at-age-3d.R
R-temp/DATA_Combined_glorys_hake_UW_for_Andy.csv
R-temp/ecosystem-summary-hake-glorys.R
R-temp/ecosystem-summary-hake-make-figures.R
R-temp/ecosystem-summary-hake.R
R-temp/ecosystem-summary-herring.R
R/a.R
R/add-tickmarks.R
R/area-mean.R
R/bccm-all-variables-full.R
R/calc_climatology_anomaly.R
R/check-index-changed.R
R/clear-cache.R
R/create-data.R
R/create-herring-object.R
R/data.R
R/get-pacea-data.R
R/get-zenodo-data.R
R/hotssea-all-variables.R
R/interpolate.R
R/lubridate-pacea-series.R
R/older-functions/BC_Major_Area_Boundaries.R
R/older-functions/Coastline.R
R/older-functions/Data_Key_Test.R
R/older-functions/PACea_custom.R
R/older-functions/PACea_fetch.R
R/older-functions/PACea_info.R
R/older-functions/PACea_regions.R
R/older-functions/PACea_request.R
R/older-functions/PACea_upload.R
R/older-functions/Pacific_Herring_Sections.R
R/older-functions/make-grid.R
R/older-functions/plot-buoy-sst.R
R/older-functions/utils.R
R/overlap.R
R/pacea-cache.R
R/pacea-import-from.R
R/pacea-installed.R
R/pacea-wrangle.R
R/plot-pacea-anom.R
R/plot-pacea-biomass-herring.R
R/plot-pacea-biomass.R
R/plot-pacea-buoy.R
R/plot-pacea-harbour-seals.R
R/plot-pacea-index.R
R/plot-pacea-oi.R
R/plot-pacea-recruitment-herring.R
R/plot-pacea-recruitment.R
R/plot-pacea-st.R
R/plot-pacea-zooplankton.R
R/plot-with-uncertainty-continuous.R
R/plot-with-uncertainty-discrete.R
R/shortcuts-get-data-bccm-full.R
R/shortcuts-get-data-bccm.R
R/shortcuts-get-data-hotssea.R
R/standardise.R
README.Rmd
README.md
data-raw/buoys/andrea-code/CIOOS_SST_2023_download_plots-andy.R
data-raw/buoys/buoy-metadata.R
data-raw/buoys/buoy-sst.R
data-raw/buoys/buoys-map.R
data-raw/coastline/coastline-eez.R
data-raw/coastline/coastline-testing.R
data-raw/coastwide-indices/alpi-surry/alpi-from-chris.r
data-raw/coastwide-indices/alpi-surry/alpi-surry-run.R
data-raw/coastwide-indices/alpi-surry/alpi-surry.R
data-raw/coastwide-indices/alpi-update.R
data-raw/coastwide-indices/coastwide-indices.R
data-raw/data-key/data-list.R
data-raw/data-key/data_list.csv
data-raw/data-key/hotssea_data_list.csv
data-raw/depth/depth-orig-ideas.R
data-raw/depth/depth.R
data-raw/depth/depth_to_grid.R
data-raw/erddap/oisst.R
data-raw/grids/create-grid.R
data-raw/grids/make-mask-layer-full.R
data-raw/grids/make-mask-layer-hotssea.R
data-raw/grids/make-mask-layer.R
data-raw/grids/older-grids/Create_BC_Partition.Rmd
data-raw/grids/older-grids/Create_BC_Partition_New.Rmd
data-raw/grids/older-grids/ERDDAP_DATA.Rmd
data-raw/grids/older-grids/READgrids.txt
data-raw/grids/older-grids/test_grid_20_partition.Rmd
data-raw/grids/test-grids.R
data-raw/groundfish/Groundfish_IPHC_Data.Rmd
data-raw/groundfish/hake.R
data-raw/groundfish/hook-with-bait.rds
data-raw/groundfish/pacific_herring_predators_ind.rds
data-raw/herring/herring.R
data-raw/hex-sticker/PACea-hex-sticker.R
data-raw/hotssea/hotssea-data-interpolation-greig.R
data-raw/hotssea/hotssea-data-interpolation.R
data-raw/hotssea/test-hotssea-bccm-full-overlap.R
data-raw/lighthouses/BC_Lightstation_Data_SHP_Files/BC_Lighthouse_DATA.cpg
data-raw/lighthouses/BC_Lightstation_Data_SHP_Files/BC_Lighthouse_DATA.dbf
data-raw/lighthouses/BC_Lightstation_Data_SHP_Files/BC_Lighthouse_DATA.prj
data-raw/lighthouses/BC_Lightstation_Data_SHP_Files/BC_Lighthouse_DATA.sbn
data-raw/lighthouses/BC_Lightstation_Data_SHP_Files/BC_Lighthouse_DATA.sbx
data-raw/lighthouses/BC_Lightstation_Data_SHP_Files/BC_Lighthouse_DATA.shp
data-raw/lighthouses/BC_Lightstation_Data_SHP_Files/BC_Lighthouse_DATA.shx
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point/Amphitrite_Point_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point/Amphitrite_Point_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point/Amphitrite_Point_-_Average_Monthly_Sea_Surface_Salinities_1934-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point/Amphitrite_Point_-_Average_Monthly_Sea_Surface_Temperatures_1934-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point/Amphitrite_Point_-_Daily_Sea_Surface_Temperature_and_Salinity_1934-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point/Amphitrite_Point_-_Daily_Sea_Surface_Temperature_and_Salinity_1934-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point_-_Average_Monthly_Sea_Surface_Salinities_1934-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Amphitrite_Point_-_Average_Monthly_Sea_Surface_Temperatures_1934-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island/Bonilla_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island/Bonilla_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island/Bonilla_Island_-_Average_Monthly_Sea_Surface_Salinities_1960-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island/Bonilla_Island_-_Average_Monthly_Sea_Surface_Temperatures_1960-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island/Bonilla_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1960-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island/Bonilla_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1960-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island_-_Average_Monthly_Sea_Surface_Salinities_1960-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Bonilla_Island_-_Average_Monthly_Sea_Surface_Temperatures_1960-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island/Chrome_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island/Chrome_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island/Chrome_Island_-_Average_Monthly_Sea_Surface_Salinities_1961-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island/Chrome_Island_-_Average_Monthly_Sea_Surface_Temperatures_1961-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island/Chrome_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1961-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island/Chrome_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1961-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island_-_Average_Monthly_Sea_Surface_Salinities_1961-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Chrome_Island_-_Average_Monthly_Sea_Surface_Temperatures_1961-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS/Departure_Bay_PBS_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS/Departure_Bay_PBS_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS/Departure_Bay_PBS_-_Average_Monthly_Sea_Surface_Salinities_1914-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS/Departure_Bay_PBS_-_Average_Monthly_Sea_Surface_Temperatures_1914-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS/Departure_Bay_PBS_-_Daily_Sea_Surface_Temperature_and_Salinity_1914-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS/Departure_Bay_PBS_-_Daily_Sea_Surface_Temperature_and_Salinity_1914-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS_-_Average_Monthly_Sea_Surface_Salinities_1914-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Departure_Bay_PBS_-_Average_Monthly_Sea_Surface_Temperatures_1914-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island/Egg_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island/Egg_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island/Egg_Island_-_Average_Monthly_Sea_Surface_Salinities_1970-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island/Egg_Island_-_Average_Monthly_Sea_Surface_Temperatures_1970-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island/Egg_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1970-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island/Egg_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1970-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island_-_Average_Monthly_Sea_Surface_Salinities_1970-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Egg_Island_-_Average_Monthly_Sea_Surface_Temperatures_1970-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island/Entrance_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island/Entrance_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island/Entrance_Island_-_Average_Monthly_Sea_Surface_Salinities_1936-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island/Entrance_Island_-_Average_Monthly_Sea_Surface_Temperatures_1936-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island/Entrance_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1936-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island/Entrance_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1936-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island_-_Average_Monthly_Sea_Surface_Salinities_1936-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Entrance_Island_-_Average_Monthly_Sea_Surface_Temperatures_1936-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island/Kains_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island/Kains_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island/Kains_Island_-_Average_Monthly_Sea_Surface_Salinities_1935-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island/Kains_Island_-_Average_Monthly_Sea_Surface_Temperatures_1935-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island/Kains_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1935-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island/Kains_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1935-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island_-_Average_Monthly_Sea_Surface_Salinities_1935-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Kains_Island_-_Average_Monthly_Sea_Surface_Temperatures_1935-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island/Langara_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island/Langara_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island/Langara_Island_-_Average_Monthly_Sea_Surface_Salinities_1936-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island/Langara_Island_-_Average_Monthly_Sea_Surface_Temperatures_1936-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island/Langara_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1936-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island/Langara_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1936-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island_-_Average_Monthly_Sea_Surface_Salinities_1936-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Langara_Island_-_Average_Monthly_Sea_Surface_Temperatures_1936-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island/McInnes_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island/McInnes_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island/McInnes_Island_-_Average_Monthly_Sea_Surface_Salinities_1954-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island/McInnes_Island_-_Average_Monthly_Sea_Surface_Temperatures_1954-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island/McInnes_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1954-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island/McInnes_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1954-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island_-_Average_Monthly_Sea_Surface_Salinities_1954-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/McInnes_Island_-_Average_Monthly_Sea_Surface_Temperatures_1954-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point/Nootka_Point_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point/Nootka_Point_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point/Nootka_Point_-_Average_Monthly_Sea_Surface_Salinities_1934-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point/Nootka_Point_-_Average_Monthly_Sea_Surface_Temperatures_1934-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point/Nootka_Point_-_Daily_Sea_Surface_Temperature_and_Salinity_1934-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point/Nootka_Point_-_Daily_Sea_Surface_Temperature_and_Salinity_1934-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point_-_Average_Monthly_Sea_Surface_Salinities_1934-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Nootka_Point_-_Average_Monthly_Sea_Surface_Temperatures_1934-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island/Pine_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island/Pine_Island_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island/Pine_Island_-_Average_Monthly_Sea_Surface_Salinities_1937-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island/Pine_Island_-_Average_Monthly_Sea_Surface_Temperatures_1937-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island/Pine_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1937-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island/Pine_Island_-_Daily_Sea_Surface_Temperature_and_Salinity_1937-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island_-_Average_Monthly_Sea_Surface_Salinities_1937-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Pine_Island_-_Average_Monthly_Sea_Surface_Temperatures_1937-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks/Race_Rocks_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks/Race_Rocks_-_Annual_Cycle_of_Sea_Surface_Temperature_and_Salinity_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks/Race_Rocks_-_Average_Monthly_Sea_Surface_Salinities_1921-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks/Race_Rocks_-_Average_Monthly_Sea_Surface_Temperatures_1921-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks/Race_Rocks_-_Daily_Sea_Surface_Temperature_and_Salinity_1921-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks/Race_Rocks_-_Daily_Sea_Surface_Temperature_and_Salinity_1921-2021_french.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks_-_Average_Monthly_Sea_Surface_Salinities_1921-2021.csv
data-raw/lighthouses/DATA_Active_Lightstations/Race_Rocks_-_Average_Monthly_Sea_Surface_Temperatures_1921-2021.csv
data-raw/lighthouses/lighthouses-by-joe.Rmd
data-raw/mammals/harbour-seals/harbour-seals.R
data-raw/misc/mtw-days.R
data-raw/roms/README_ROMS_output.txt
data-raw/roms/file-size-testing.R
data-raw/roms/isobath_sfline.R
data-raw/roms/point2rast_interpolation.R
data-raw/roms/roms-data-interpolation-full.R
data-raw/roms/roms-data-interpolation.R
data-raw/roms/roms-data-interpolationTESTING.R
data-raw/roms/roms_ncdf4.R
data-raw/roms/shelf_bry.csv
data-raw/testdata/test_corruptdata.rds
data-raw/testdata/test_surftemp.rds
data-raw/zooplankton/zooplankton.R
data/alpi.rda
data/ao.rda
data/bc_coast.rda
data/bc_eez.rda
data/bccm_data.rda
data/bccm_data_full.rda
data/bccm_eez_poly.rda
data/bi.rda
data/buoy_metadata.rda
data/buoy_sst.rda
data/grid26.rda
data/grid26_depth.rda
data/hake_biomass.rda
data/hake_biomass_2023.rda
data/hake_biomass_2024.rda
data/hake_biomass_2025.rda
data/hake_recruitment.rda
data/hake_recruitment_2023.rda
data/hake_recruitment_2024.rda
data/hake_recruitment_2025.rda
data/hake_recruitment_deviations.rda
data/hake_recruitment_deviations_2024.rda
data/hake_recruitment_deviations_2025.rda
data/hake_recruitment_over_2010.rda
data/hake_recruitment_over_2010_2023.rda
data/hake_recruitment_over_2010_2024.rda
data/hake_recruitment_over_2010_2025.rda
data/hake_recruitment_over_R0.rda
data/hake_recruitment_over_R0_2023.rda
data/hake_recruitment_over_R0_2024.rda
data/hake_recruitment_over_R0_2025.rda
data/hake_total_biomass_age_1.rda
data/hake_total_biomass_age_1_2024.rda
data/hake_total_biomass_age_1_2025.rda
data/hake_total_biomass_at_age.rda
data/hake_total_biomass_at_age_2025.rda
data/harbour_seals.rda
data/harbour_seals_data_final_year.rda
data/herring_recruitment.rda
data/herring_recruitment_2023.rda
data/herring_spawning_biomass.rda
data/herring_spawning_biomass_2023.rda
data/hotssea_data.rda
data/hotssea_poly.rda
data/inshore_poly.rda
data/isobath_200m.rda
data/last_npi_annual.rda
data/last_npi_monthly.rda
data/mei.rda
data/npgo.rda
data/npi_annual.rda
data/npi_monthly.rda
data/offshore_poly.rda
data/oisst_7day.rda
data/oisst_month.rda
data/older-data/BC_Major_Area_Boundaries.rda
data/older-data/BC_Partition_Objects.rda
data/older-data/Coastline.rda
data/older-data/Coastline_Expanded.rda
data/older-data/Coastline_Grid.rda
data/older-data/Coastwide_Index_DF.rda
data/older-data/Data_Key.rda
data/older-data/ERDDAP_DF.rda
data/older-data/Groundfish_IPHC_DF.rda
data/older-data/Lighthouse_SST_Salinity_DF.rda
data/older-data/Pacific_Herring_Sections.rda
data/oni.rda
data/pacea_indices.rda
data/pdo.rda
data/soi.rda
data/zooplankton_sog.rda
data/zooplankton_sog_axis_names.rda
ideas/edwards-short-eafm-talk-oct-2023.pdf
ideas/edwards-short-eafm-talk-oct-2023.pptx
inst/CITATION
inst/DFO_Logo.png
inst/andrea-github.png
inst/buoys-vignette-screenshot.png
inst/elusive.png
inst/pacea-logo-for-printing.jpg
inst/pacea-logo-from-carley-2.png
inst/pacea-logo-from-carley-3.png
inst/pacea-logo-from-carley.png
man/a.Rd
man/add_tickmarks.Rd
man/alpi.Rd
man/ao.Rd
man/area_mean.Rd
man/bc_coast.Rd
man/bc_eez.Rd
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man/create_herring_object.Rd
man/figures/README-bccm.png
man/figures/README-bccm_full.png
man/figures/README-hake.png
man/figures/README-harbour-seals.png
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man/figures/README-oni.png
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man/figures/README-zooplankton.png
man/figures/buoys_map.png
man/figures/logo-ho-ho-ho.png
man/figures/logo.png
man/get_pacea_data.Rd
man/get_zenodo_data.Rd
man/grid26.Rd
man/grid26_depth.Rd
man/hake_biomass.Rd
man/hake_recruitment.Rd
man/hake_recruitment_deviations.Rd
man/hake_recruitment_over_2010.Rd
man/hake_recruitment_over_R0.Rd
man/hake_total_biomass_age_1.Rd
man/harbour_seals.Rd
man/harbour_seals_data_final_year.Rd
man/herring_recruitment.Rd
man/herring_spawning_biomass.Rd
man/hotssea_all_variables.Rd
man/hotssea_data.Rd
man/hotssea_surface_salinity_min.Rd
man/isobath_200m.Rd
man/last_npi_annual.Rd
man/last_npi_monthly.Rd
man/lubridate_pacea_series.Rd
man/mei.Rd
man/npgo.Rd
man/npi_annual.Rd
man/npi_monthly.Rd
man/oisst_7day.Rd
man/oni.Rd
man/overlap.Rd
man/pacea_cache.Rd
man/pacea_clear_cache.Rd
man/pacea_import_from.Rd
man/pacea_indices.Rd
man/pacea_installed.Rd
man/pacea_long.Rd
man/pdo.Rd
man/plot.pacea_biomass.Rd
man/plot.pacea_biomass_herring.Rd
man/plot.pacea_buoy.Rd
man/plot.pacea_harbour_seals.Rd
man/plot.pacea_index.Rd
man/plot.pacea_oi.Rd
man/plot.pacea_oianom.Rd
man/plot.pacea_recruitment.Rd
man/plot.pacea_recruitment_herring.Rd
man/plot.pacea_st.Rd
man/plot.pacea_stanom.Rd
man/plot.pacea_zooplankton.Rd
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man/plot_red_blue_bar.Rd
man/plot_with_uncertainty_discrete.Rd
man/point2rast.Rd
man/standardise.Rd
man/zooplankton_sog.Rd
man/zooplankton_sog_axis_names.Rd
notes/BCCM_dataprocessing.Rmd
notes/GridCoastEEZ_generation.Rmd
notes/debugging.R
talks/bccm-short.Rmd
talks/bccm.Rmd
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talks/hotssea-short.Rmd
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talks/summary-sopo-25.Rmd
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talks/talks-manual-figures/oni-bars-only.R
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talks/talks-manual-figures/pacea-release-title-slide-uvic.png
talks/talks-manual-figures/pacea-release-title-slide-uvic.pptx
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talks/talks-manual-figures/pacea-sopo24-demo-advert.pptx
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tests/testthat.R
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tests/testthat/test-calc_climatology_anomaly.R
tests/testthat/test-check-index-changed.R
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tests/testthat/test-plot-pacea-st.R
tests/testthat/test-plot-time-series.R
tests/testthat/test-shortcuts-get-data.R
vignettes/bccm.Rmd
vignettes/bccm.html
vignettes/bccm_full.Rmd
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vignettes/buoys.Rmd
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vignettes/hotssea.Rmd
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vignettes/indices.Rmd
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vignettes/oisst.Rmd
vignettes/oisst.html
vignettes/oisst_to_grid26.Rmd
vignettes/old-vignettes/PACea_User_Demonstration.Rmd
vignettes/populations.Rmd
vignettes/populations.html
vignettes/zooplankton.Rmd
vignettes/zooplankton.html
