R/gfdata-package.R

In pbs-assess/gfdata: Data Extraction for DFO PBS Groundfish Stocks

#' @keywords internal
"_PACKAGE"

## usethis namespace: start
## usethis namespace: end
NULL

#' @importFrom dplyr filter mutate summarise select group_by n arrange ungroup
#' @importFrom dplyr inner_join left_join right_join anti_join full_join
#' @importFrom dplyr semi_join relocate where distinct
#' @importFrom dplyr bind_rows case_when pull contains tibble rename as_tibble
#' @importFrom magrittr %>%
#' @importFrom rlang .data
#' @importFrom stats na.omit
#'
NULL

if (getRversion() >= "2.15.1") utils::globalVariables(c("."))
if (getRversion() >= "2.15.1") {
  utils::globalVariables(
    c(
      ".time_diff",
      ".year_start_date",
      "SPECIES_CODE",
      "SPECIES_COMMON_NAME",
      "SPECIES_DESC",
      "SPECIES_SCIENCE_NAME",
      "SURVEY_ABBREV ",
      "SURVEY_SERIES_DESC",
      "SURVEY_SERIES_ID",
      "action_start_date",
      "avg",
      "best_date",
      "DAY",
      "MONTH",
      "TIME_DEPLOYED",
      "TIME_RETRIEVED",
      "count",
      "parameter",
      "parent_rsty_id",
      "parent_taxonomic_unit",
      "row_version",
      "rsty_id",
      "sampling_desc",
      "species_ageing_group",
      "species_code",
      "species_common_name",
      "species_desc",
      "species_grouping",
      "species_science_name",
      "taxonomic_rank",
      "totcatch_kg",
      "trip_start_date",
      "FISHING_EVENT_ID",
      "LATITUDE_END",
      "LONGITUDE_END",
      "fork_length",
      "second_dorsal_length",
      "standard_length",
      "total_length",
      "unit",
      "usability_code",
      "value",
      "year",
      "SURVEY_ABBREV",
      "selection_ind",
      "CAPTAIN_ID",
      "DEPTH_M",
      "LATITUDE",
      "LONGITUDE",
      "VESSEL_ID",
      "FE_MAJOR_LEVEL_ID",
      "FE_MINOR_LEVEL_ID",
      "FE_PARENT_EVENT_ID",
      "FE_SUB_LEVEL_ID",
      "GROUPING_CODE",
      "GROUPING_DESC",
      "GROUPING_CODE_ORIGINAL",
      "GROUPING_DESC_ORIGINAL",
      "GROUPING_CODE_UPDATED",
      "GROUPING_DESC_UPDATED",
      "HOOKSIZE_DESC",
      "HOOK_CODE",
      "HOOK_DESC",
      "LGLSP_HOOK_COUNT",
      "MINOR_ID_COUNT",
      "MINOR_ID_MAX",
      "MINOR_STAT_AREA_CODE",
      "ORIGINAL_IND",
      "REASON_DESC",
      "ROW_VERSION",
      "SKATE_COUNT",
      "SURVEY_ID",
      "SURVEY_SERIES_OG",
      "TRIP_ID",
      "USABILITY_CODE",
      "YEAR",
      "age",
      "catch_count",
      "catch_weight",
      "dna_container_id",
      "dna_sample_type",
      "doorspread_m",
      "fe_minor_level_id",
      "fe_parent_event_id",
      "fe_sub_level_id",
      "fishing_event_id",
      "grouping_code",
      "grouping_desc",
      "grouping_code_original",
      "grouping_desc_original",
      "grouping_code_updated",
      "grouping_desc_updated",
      "hook_code",
      "hook_desc",
      "hooksize_desc",
      "lglsp_hook_count",
      "minor_id_count",
      "minor_id_max",
      "original_ind",
      "sample_source_code",
      "sample_type_code",
      "sex",
      "skate_count",
      "skate_id",
      "species_category_code",
      "specimen_id",
      "speed_mpm",
      "survey_abbrev",
      "survey_series_desc",
      "survey_series_id",
      "usability_desc",
      "weight",
      "counts_diff",
      "event_level_count"
    )
  )
}