Data Extraction and Plotting for DFO PBS Groundfish Stocks

assign_areas | Assign areas |

bind_samples | Join survey and commercial samples |

fit_cpue_index_glmmtmb | Fit CPUE with glmmTMB |

fit_inla | Fit a spatial model with INLA |

fit_length_weight | Fit a length-weight model |

fit_vb | Fit a von Bertalanffy growth model |

get_cpue_historical | Get all fishing catch and effort to calculate historical... |

get_data | Get PBS data |

gfplot | gfplot package |

hbll_grid | A 2km x 2km grid for the HBLL survey |

hbll_n_grid | A 2km x 2km grid for the HBLL North survey |

hbll_s_grid | A 2km x 2km grid for the HBLL South survey |

inject_filter | gfplot utilities |

pbs_areas | PBS groundfish areas |

pbs_species | PBS groundfish species |

pipe | Pipe operator |

plot_age_precision | Plot ageing precision data |

plot_ages | Plot age frequency data |

plot_catch | Plot catch data over time |

plot_cpue_spatial | Plot a map of commercial CPUE |

plot_growth | Plot von Bertalanffy or length-weight fits |

plot_lengths | Plot length frequency data |

plot_mat_ogive | Fit and plot maturity ogives |

plot_maturity_months | Plot maturity frequency by month |

plot_predictor_bubbles | Make predictor level bubble plots |

plot_sample_avail | Plot sample availability |

plot_survey_index | Plot survey relative biomass mass index |

plot_survey_sets | Plot the output from a geostatistical model of survey data |

pop_samples | Example Pacific Ocean Perch biological samples from QCS. |

pop_surv | Example Pacific Ocean Perch survey data from QCS in 2015 |

qres_tweedie | Quantile residuals for a Tweedie GLMM fit with glmmTMB |

run_sql | Run SQL |

survey_boundaries | Survey boundaries |

survey-spatial-modelling | Spatial modeling of survey data |

theme_pbs | A ggplot2 theme |

tidy_age_precision | Tidy PBS ageing precision data |

tidy_comps | Tidy age or length composition data for plotting or modelling |

tidy_cpue_historical | Tidy historical CPUE data |

tidy_cpue_index | Tidy commercial PBS CPUE data |

tidy_sample_avail | Tidy PBS samples data for 'plot_sample_avail()' |

tidy_survey_sets | Tidy the survey set data for use in modeling |

weight_comps | Age and length frequency weighting |

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