plot_maturity_months: Plot maturity frequency by month

In pbs-assess/gfplot: Data Extraction and Plotting for DFO PBS Groundfish Stocks

Plot maturity frequency by month

Description

Plot maturity frequency by month

Usage

tidy_maturity_months(
  dat,
  months = seq(1, 12),
  usability_codes = c(0, 1, 2, 6),
  french = FALSE
)

plot_maturity_months(
  dat,
  max_size = 9,
  sex_gap = 0.2,
  fill_col = c(M = "grey70", F = "black"),
  line_col = c(M = "grey70", F = "black"),
  alpha = 0.8,
  title = "Maturity frequencies",
  n_label_pos = c(0.7, 1.3),
  min_fish = 0,
  french = FALSE
)

Arguments

dat	For tidy_maturity_months(), data from gfdata::get_survey_samples() or gfdata::get_commercial_samples() or bind_samples(). For plot_maturity_months(), data from tidy_maturity_months().
months	A vector of months to include. Defaults to all.
usability_codes	An optional vector of usability codes. All usability codes not in this vector will be omitted. Set to NULL to include all samples.
french	Logical for French or English.
max_size	The maximum size of the circles.
sex_gap	A gap to separate the male and female circles.
fill_col	The fill color of the circles.
line_col	The line color of the circles.
alpha	The transparency of the circles.
title	A title to add to the plot.
n_label_pos	A numeric vector of length 2 that gives the y position of the text describing the number of male and female samples within each month bin.
min_fish	The minimum number of fish for the circles to be plotted for a given month.

Examples

## Not run: 
# pop_samples <- gfdata::get_survey_samples("pacific ocean perch")
tidy_maturity_months(pop_samples) %>%
  plot_maturity_months()

## End(Not run)
## Not run: 
d <- gfdata::get_survey_samples("lingcod")
tidy_maturity_months(d) %>%
  plot_maturity_months()

## End(Not run)

pbs-assess/gfplot documentation built on April 3, 2024, 2:10 p.m.