Man pages for pbs-assess/gfranges
Groundfish Ranges
| add_colours | Function for adding colours and species traits |
| add_missing_depths | Add missing depths |
| align_legend | Title |
| bioclim_by_year | Biennial bioclimatic estimates |
| bioclim_multi_year | Bioclimatic estimates for multiyear period |
| calcslope | Calculate trend in varible for pixels in a raster brick |
| chopstick_slopes | Save slopes from chopstick plots |
| coef_scatterplot | Plot coefficients against species traits |
| collapse_outliers | Collapse outliers produced by velocity calculations |
| dist_based_vocc | Velocity of climate change based on distance |
| dotplot_error | Unordered dotplot |
| effect_plot | Title |
| firstup | Add capitals to start of strings |
| fixed_density | Calculate density curve for non-time-varying, scaled,... |
| geom_quiver | Quiver plots for ggplot2 |
| get_optimal_value | Find optimal value from density curve |
| get_quadratic_roots | Find roots of quadratic fixed effect curves |
| interaction_df | Make prediction dataframe for chopsticks |
| interp_survey_bathymetry | Interpolate survey bathymetry |
| make_gradient_brick | Create a RasterBrick from gridded predictions |
| make_raster_brick | Make raster brick from dataframe of predicted values through... |
| make_trend_data | Make trend data from sdmTMB output predict funciton |
| make_vector_data | Make VOCC vector data from sdmTMB output predict funciton |
| plot_chop_est | Plot estimates from ends of chopsticks |
| plot_chopstick_slopes | Plot slopes from chopstick plots |
| plot_clusters | Plot clusters |
| plot_coefs | Plot coefficients from vocc_regression |
| plot_effect_continuous | Title |
| plot_facet_map | Raster map with year facets |
| plot_fuzzy_chopsticks | Plot interactions with confidence intervals |
| plot_gradient_vocc | Plot gradient vocc with vectors coloured by variable |
| plot_mat_ogive | Fit and plot maturity ogives |
| plot_mountains | Predicted curves for parameters in sdmTMB models |
| plot_parametric | Visualization of group estimates. |
| plot_raw_chopsticks | Plot raw chopsticks for vocc regression models |
| plot_survey_sets | Revised plot survey sets |
| plot_vocc | Plot climate change vectors |
| raster_slopes | Calculates slope for regression line through values of raster... |
| scale_predictors | Scale survey predictors |
| shortener | Strip qualifiers from variable names |
| slope_scatterplot | Scatterplot of slopes against traits |
| spatiotemporal_grid | Create prediction grid for each year |
| split_catch_maturity | Split catch densities by mass ratio of maturity classes |
| tidy_survey_sets | Tidy the survey set data for use in modeling |
| time_varying_density | Calculate density curve for time-varying parameters |
| trim_vector_data | Trim VOCC output to only include vectors for cells with... |
| vocc_gradient_calc | Velocity of climate change |
