plot_fuzzy_chopsticks: Plot interactions with confidence intervals

In pbs-assess/gfranges: Groundfish Ranges

Description

Plot interactions with confidence intervals

Usage

plot_fuzzy_chopsticks(
  model,
  y_label = "Predicted biomass trend",
  x_variable = "temp_trend_scaled",
  type = NULL,
  colours = NULL,
  line_size = 0.7,
  alpha_range = c(0.25, 0.9),
  global_col = "gray30",
  choose_species = NULL,
  choose_age = NULL,
  order_by_chops = c("low", "high"),
  slopes = NULL,
  imm_model = NULL,
  imm_slopes = NULL,
  rug = F
)

Arguments

model	TMB model with X_pj and pred_dat elements
y_label	Label response variable
x_variable	Variable to plot on x axis
type	Interaction type, if more than one in model
colours	Default NULL gives red for high and blue for low
line_size	Change line thickness
alpha_range	Choose alpha for non-sig and sig slopes
global_col	Set colour for global chopsticks
choose_species	Option to choose just one species
choose_age	Option to choose just one age class
slopes	Df of slopes from chopstick_slopes function
imm_model	Add immature data from separate model
imm_slopes	Add separate slope df for immatures
rug	Logical for adding rug
order_var	Varible to order plots by

Examples

plot_fuzzy_chopsticks(model,
  y_label = "Predicted biomass trend",
  x_variable = "temp_trend_scaled",
  type = "temp"
)

pbs-assess/gfranges documentation built on Dec. 13, 2021, 4:50 p.m.