Man pages for pbs-assess/gfranges
Groundfish Ranges

add_coloursFunction for adding colours and species traits
add_missing_depthsAdd missing depths
align_legendTitle
bioclim_by_yearBiennial bioclimatic estimates
bioclim_multi_yearBioclimatic estimates for multiyear period
calcslopeCalculate trend in varible for pixels in a raster brick
chopstick_slopesSave slopes from chopstick plots
coef_scatterplotPlot coefficients against species traits
collapse_outliersCollapse outliers produced by velocity calculations
dist_based_voccVelocity of climate change based on distance
dotplot_errorUnordered dotplot
effect_plotTitle
firstupAdd capitals to start of strings
fixed_densityCalculate density curve for non-time-varying, scaled,...
geom_quiverQuiver plots for ggplot2
get_optimal_valueFind optimal value from density curve
get_quadratic_rootsFind roots of quadratic fixed effect curves
interaction_dfMake prediction dataframe for chopsticks
interp_survey_bathymetryInterpolate survey bathymetry
make_gradient_brickCreate a RasterBrick from gridded predictions
make_raster_brickMake raster brick from dataframe of predicted values through...
make_trend_dataMake trend data from sdmTMB output predict funciton
make_vector_dataMake VOCC vector data from sdmTMB output predict funciton
plot_chop_estPlot estimates from ends of chopsticks
plot_chopstick_slopesPlot slopes from chopstick plots
plot_clustersPlot clusters
plot_coefsPlot coefficients from vocc_regression
plot_effect_continuousTitle
plot_facet_mapRaster map with year facets
plot_fuzzy_chopsticksPlot interactions with confidence intervals
plot_gradient_voccPlot gradient vocc with vectors coloured by variable
plot_mat_ogiveFit and plot maturity ogives
plot_mountainsPredicted curves for parameters in sdmTMB models
plot_parametricVisualization of group estimates.
plot_raw_chopsticksPlot raw chopsticks for vocc regression models
plot_survey_setsRevised plot survey sets
plot_voccPlot climate change vectors
raster_slopesCalculates slope for regression line through values of raster...
scale_predictorsScale survey predictors
shortenerStrip qualifiers from variable names
slope_scatterplotScatterplot of slopes against traits
spatiotemporal_gridCreate prediction grid for each year
split_catch_maturitySplit catch densities by mass ratio of maturity classes
tidy_survey_setsTidy the survey set data for use in modeling
time_varying_densityCalculate density curve for time-varying parameters
trim_vector_dataTrim VOCC output to only include vectors for cells with...
vocc_gradient_calcVelocity of climate change
pbs-assess/gfranges documentation built on Dec. 13, 2021, 4:50 p.m.