Man pages for pbs-assess/hakedata
Data Extraction for Pacific Hake Assessment
| bc_bathymetry | A list of length-3 lists containing points which can be used... |
| calc_lw_params | Calculate the length-weight relationship parameters for the... |
| coast_10m | An sf LINESTRING object which contains data for 10m... |
| contours_as_sfg | Convert output from the 'grDevices::contourLines()' function... |
| conv_spatial | Merge all dataframes into one spatial dataframe. See sf... |
| create_catch_csv_file | Create a CSV file with catch by year and month for a... |
| dmp_catch_data_raw_file | Name of the DMP catch rds file |
| dmp_catch_sql_file | Name of the DMP catch SQL file |
| dmp_file | Constants for the hakedata package |
| dot-onLoad | When the package is loaded, set ggplot theme to hake theme |
| far_point | An sf class POINT which represents a point at the lower... |
| fetch_catch_data | Fetch the DMP catch from the FOS database |
| fetch_sample_data | Fetch the sample data from the GFBIOSQL database The data... |
| fetch_sample_data_gfdata | Fetch the sample data from the GFBIOSQL database The data... |
| fetch_spatial_catch_data | Run SQL code on the server database and return the records |
| fetch_survey_data | Get the survey sample data for the Hake acoustic survey |
| fit_lw | Fit a length-weight model |
| freezer_trawlers | Data frame with the freexer trawler names and unique IDs by... |
| get_age_props | Calculate the weighted age proportions for the input data |
| get_catch | Get the catch data from the DMP and LOGS data frames |
| get_comm_wa | Get the weight-at-age data frame for commercial data. |
| get_depth_by_year | Get depth data by year and calculate boxplot stats on it.... |
| get_surv_wa | Get the weight-at-age data frame for the acoustic survey |
| hake_catch_ft_file | Name of the freezer trawler catch rds file |
| hake_catch_jv_file | Name of the joint venture catch rds file |
| hake_catch_ss_file | Name of the shoreside catch rds file |
| hakedata | hakedata package |
| hake_theme | ggplot2 theme for hake |
| inject_fishery_filter | Inject SQL code for fishery categories and types based on the... |
| lbs_to_kilos | Conversion factor from pounds to kilograms |
| load_catch_data | Loads data from RDS files found in the data directory |
| load_sample_data | load the commercial sample data from the file generated by... |
| load_spatial_catch_data | Loads spatial catch data from RDS files found in the data... |
| load_survey_data | Loads survey data from RDS files found in the data directory |
| logs_catch_data_raw_file | Name of the LOGS catch rds file |
| logs_catch_sql_file | Name of the LOGS catch SQL file |
| logs_pattern | Pattern for regular expressions to use for LOGS data files |
| major_hake_areas | Major PFMA areas used when assessing hake |
| make_grid | Create a grid based on fishing event data. |
| plot_color | Colors for the Hake Assessment |
| plot_cumu_catch | Plot_cumu_catch |
| plot_depths | Plot depth boxplots by year (catchdate) or histograms for a... |
| plot_lengths | Plot length distributions as histograms |
| plot_spatial | Spatial plot of data by block |
| read_sql | Read in SQL code from a package file |
| remove_trip_data | Remove some trip types from a data frame |
| sample_data_raw_file | Name of the commerical samples rds file |
| sample_summary | Summarize the numbers of lengths, weights, ages,... |
| spatial_catch_sql_file | Name of the spatial catch SQL template file |
| species_name | Name of the species |
| strip_lines | Strip header lines of LOGBOOK file |
| survey_data_file | Name of the survey data rds file |
