Description Usage Arguments Value Author(s) References Examples
This function allows users to download and parse the last version of the Food-Biomarker Ontology into a readable table format.
parse_fobi(terms = NULL, get = NULL)
A character vector with FOBI term IDs. Default is NULL.
A character string indicating desired relationships between provided terms. Options are 'anc' (for ancestors) and 'des' (for descendants). Default is NULL and only information of single input terms will be provided.
A tibble with FOBI terms information.
Pol Castellano-Escuder, Raúl González-Domínguez, David S Wishart, Cristina Andrés-Lacueva, Alex Sánchez-Pla, FOBI: an ontology to represent food intake data and associate it with metabolomic data, Database, Volume 2020, 2020, baaa033, https://doi.org/10.1093/databa/baaa033.
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# Download and parse whole FOBI fobi <- parse_fobi() # Download and parse 'apple' related terms fobi_apple <- parse_fobi(terms = "FOODON:00002473") # Download and parse 'apple' term ancestors fobi_apple_anc <- parse_fobi(terms = "FOODON:00002473", get = "anc") # Download and parse 'apple' and 'alpha-Chaconine' related terms fobi_subset <- parse_fobi(terms = c("FOODON:00002473", "CHEBI:10219"))
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