pedersen-fisheries-lab/spaspm
Spatial Surplus Production Model Framework for Northern Shrimp Populations

Package index
Search the pedersen-fisheries-lab/spaspm package
Vignettes
Functions
317
Source code
55
Man pages
42
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pedersen-fisheries-lab/spaspm: Spatial Surplus Production Model Framework for Northern Shrimp Populations
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API

API for pedersen-fisheries-lab/spaspm
Spatial Surplus Production Model Framework for Northern Shrimp Populations

Global functions
$,sspm-method Man page
$,sspm_boundary-method Man page
$,sspm_dataset-method Man page
$,sspm_discrete_boundary-method Man page
%>% Man page
ICAR Source code
ICAR_s_space Source code
ICAR_s_space_time Source code
ICAR_s_time Source code
ICAR_space Source code
ICAR_time Source code
LINPRED Source code
apply_corrections Source code
as_discretization_method Man page
as_discretization_method,character,ANY-method Man page
as_discretization_method,missing,function-method Man page
assemble_smooth Source code
assert_column Source code
borealis_simulated Man page
calculate_spatial_feature_areas Source code
cast_special_variables Source code
cat_boundaries Source code
cat_data Source code
cat_discretization_info Source code
cat_smoothed_data Source code
catch_simulated Man page
check_boundaries Source code
check_identical_boundaries Source code
check_nb_samples_formatting Source code
check_patches Source code
check_spatial_inputs Source code
clean_data_for_joining Source code
cleanup_polygons Source code
confidence_interval Source code
custom_h1 Source code
discretization_method-class Man page
dispatch_method Source code
dispatch_smooth Source code
extract Man page
find_quantiles Source code
find_special_terms Source code
fit_smooths Man page
fit_smooths,sspm_dataset,sspm_discrete_boundary-method Man page
fit_spm Man page
fit_spm,sspm,sspm_formula-method Man page
format_formula Source code
formula_type Man page
formula_type,sspm_formula-method Man page
formula_type<- Man page
formula_type<-,sspm_formula-method Man page
formula_vars Man page
formula_vars,sspm_formula-method Man page
formula_vars<- Man page
formula_vars<-,sspm_formula-method Man page
get_apply_fun Source code
get_lagged_var_names Source code
get_var_names Source code
group_data Source code
has_biomass_units Source code
is_biomass Source code
is_fitted Man page
is_fitted,sspm_formula-method Man page
is_fitted<- Man page
is_fitted<-,sspm_formula-method Man page
is_mapped Man page
is_mapped,sspm_dataset-method Man page
is_mapped<- Man page
is_mapped<-,sspm_dataset-method Man page
is_split Man page
is_split,sspm-method Man page
is_split<- Man page
is_split<-,sspm-method Man page
is_sspm_dataset Source code
is_units Source code
join_datasets Source code
join_smoothed_datasets Source code
lag_data_frame Source code
make_base_from_bounds Source code
make_by_matrix Source code
make_lag_matrix Source code
make_next_ts_data Source code
make_patches_voronoi Source code
make_prediction_matrix Source code
map_formula Man page
map_formula,sf,ANY,formula-method Man page
merge_small_polygons Source code
method_func Man page
method_func,discretization_method-method Man page
method_func<- Man page
method_func<-,discretization_method-method Man page
modify_call Source code
multilag Source code
plot Man page
plot,sspm_boundary,missing-method Man page
plot,sspm_dataset,missing-method Man page
plot,sspm_fit,missing-method Man page
plot.sspm Man page
plot_biomass Source code
plot_productivity Source code
plot_train_test Source code
pluralize_data_info Source code
predator_simulated Man page
predict Man page
predict,sspm_dataset-method Man page
predict,sspm_fit-method Man page
predict.sspm Man page
predict_biomass Source code
predict_biomass_intervals Source code
predict_intervals Man page Source code
predict_next_ts Source code
predict_productivity Source code
prediction_interval Source code
process_actual_biomass Source code
process_formula_vars Source code
process_next_ts Source code
produce_sims Source code
raw_formula Man page
raw_formula,sspm_formula-method Man page
raw_formula<- Man page
raw_formula<-,sspm_formula-method Man page
run_catch_aggregation_checks Source code
sample_points Source code
set_biomass Source code
set_biomass_density Source code
sfa_boundaries Man page
simple_str_detect Source code
smooth_lag Man page
smooth_lag,ANY,sf,sspm_discrete_boundary-method Man page
smooth_routine Source code
smooth_space Man page
smooth_space,sf,sspm_discrete_boundary-method Man page
smooth_space_time Man page
smooth_space_time,sf,sspm_discrete_boundary-method Man page
smooth_time Man page
smooth_time,sf,sspm_discrete_boundary-method Man page
sort_out_smoothed_vars Source code
spm Man page
spm,sspm,formula-method Man page
spm,sspm,missing-method Man page
spm_ Man page
spm_aggregate Man page
spm_aggregate,sspm_dataset,missing-method Man page
spm_aggregate,sspm_dataset,sspm_discrete_boundary-method Man page
spm_aggregate_catch Man page
spm_aggregate_catch,sspm_dataset,sspm_dataset,character,characte Man page
spm_aggregate_routine Source code
spm_aggregation_choices Source code
spm_aggregation_levels_choices Source code
spm_aggregation_types_choices Source code
spm_as_boundary Man page
spm_as_boundary,ANY,missing,ANY,ANY-method Man page
spm_as_boundary,missing,ANY,ANY,ANY-method Man page
spm_as_boundary,sf,character,ANY,ANY-method Man page
spm_as_boundary,sf,character,missing,missing-method Man page
spm_as_dataset Man page
spm_as_dataset,data.frame,ANY,ANY,ANY,character-method Man page
spm_as_dataset,data.frame,ANY,ANY,ANY,list-method Man page
spm_as_dataset,data.frame,ANY,ANY,ANY,missingOrNULL-method Man page
spm_as_dataset,sf,ANY,ANY,ANY,ANY-method Man page
spm_biomass_vars Man page
spm_biomass_vars,sspm_dataset-method Man page
spm_biomass_vars<- Man page
spm_biomass_vars<-,sspm_dataset-method Man page
spm_boundaries Man page
spm_boundaries,sspm-method Man page
spm_boundaries,sspm_boundary-method Man page
spm_boundaries,sspm_dataset-method Man page
spm_boundaries,sspm_fit-method Man page
spm_boundaries<- Man page
spm_boundaries<-,sspm-method Man page
spm_boundaries<-,sspm_boundary-method Man page
spm_boundaries<-,sspm_dataset-method Man page
spm_boundaries<-,sspm_fit-method Man page
spm_boundary Man page
spm_boundary,sspm_boundary-method Man page
spm_boundary,sspm_fit-method Man page
spm_boundary<- Man page
spm_boundary<-,sspm_boundary-method Man page
spm_boundary<-,sspm_fit-method Man page
spm_boundary_area Man page
spm_boundary_area,sspm_boundary-method Man page
spm_boundary_area<- Man page
spm_boundary_area<-,sspm_boundary-method Man page
spm_coords_col Man page
spm_coords_col,sspm_dataset-method Man page
spm_coords_col<- Man page
spm_coords_col<-,sspm_dataset-method Man page
spm_data Man page
spm_data,sspm_dataset-method Man page
spm_data<- Man page
spm_data<-,sspm_dataset-method Man page
spm_datasets Man page
spm_datasets,sspm-method Man page
spm_datasets<- Man page
spm_datasets<-,sspm-method Man page
spm_density_vars Man page
spm_density_vars,sspm_dataset-method Man page
spm_density_vars<- Man page
spm_density_vars<-,sspm_dataset-method Man page
spm_discret_method Man page
spm_discret_method,sspm_discrete_boundary-method Man page
spm_discret_method<- Man page
spm_discret_method<-,sspm_discrete_boundary-method Man page
spm_discretize Man page
spm_discretize,sspm_boundary,ANY,missing-method Man page
spm_discretize,sspm_boundary,character,ANY-method Man page
spm_discretize,sspm_boundary,discretization_method,ANY-method Man page
spm_discretize,sspm_boundary,function,ANY-method Man page
spm_discretize,sspm_boundary,missing,ANY-method Man page
spm_formulas Man page
spm_formulas,sspm_dataset-method Man page
spm_formulas,sspm_fit-method Man page
spm_formulas<- Man page
spm_formulas<-,sspm_dataset-method Man page
spm_formulas<-,sspm_fit-method Man page
spm_get_fit Man page
spm_get_fit,sspm_fit-method Man page
spm_get_fit<- Man page
spm_get_fit<-,sspm_fit-method Man page
spm_lag Man page
spm_lag,sspm-method Man page
spm_lag,sspm_fit-method Man page
spm_lagged_vars Man page
spm_lagged_vars,sspm_formula-method Man page
spm_lagged_vars<- Man page
spm_lagged_vars<-,sspm_formula-method Man page
spm_methods Man page Source code
spm_name Man page
spm_name,discretization_method-method Man page
spm_name,sspm_dataset-method Man page
spm_name<- Man page
spm_name<-,discretization_method-method Man page
spm_name<-,sspm_dataset-method Man page
spm_patches Man page
spm_patches,sspm_discrete_boundary-method Man page
spm_patches<- Man page
spm_patches<-,sspm_discrete_boundary-method Man page
spm_patches_area Man page
spm_patches_area,sspm_discrete_boundary-method Man page
spm_patches_area<- Man page
spm_patches_area<-,sspm_discrete_boundary-method Man page
spm_plot_routine Source code
spm_points Man page
spm_points,sspm_discrete_boundary-method Man page
spm_points<- Man page
spm_points<-,sspm_discrete_boundary-method Man page
spm_response Man page
spm_response,sspm_formula-method Man page
spm_response<- Man page
spm_response<-,sspm_formula-method Man page
spm_set_units Source code
spm_smooth Man page
spm_smooth,ANY,ANY,missing-method Man page
spm_smooth,ANY,ANY,sspm_boundary-method Man page
spm_smooth,ANY,missing,ANY-method Man page
spm_smooth,sspm_dataset,formula,sspm_discrete_boundary-method Man page
spm_smooth_methods Man page Source code
spm_smoothed_data Man page
spm_smoothed_data,sspm-method Man page
spm_smoothed_data,sspm_dataset-method Man page
spm_smoothed_data,sspm_fit-method Man page
spm_smoothed_data<- Man page
spm_smoothed_data<-,sspm-method Man page
spm_smoothed_data<-,sspm_dataset-method Man page
spm_smoothed_data<-,sspm_fit-method Man page
spm_smoothed_fit Man page
spm_smoothed_fit,sspm_dataset-method Man page
spm_smoothed_fit<- Man page
spm_smoothed_fit<-,sspm_dataset-method Man page
spm_smoothed_vars Man page
spm_smoothed_vars,sspm_dataset-method Man page
spm_smoothed_vars<- Man page
spm_smoothed_vars<-,sspm_dataset-method Man page
spm_split Man page
spm_split,sspm-method Man page
spm_time Man page
spm_time,sspm-method Man page
spm_time,sspm_dataset-method Man page
spm_time,sspm_fit-method Man page
spm_time<- Man page
spm_time<-,sspm-method Man page
spm_time<-,sspm_dataset-method Man page
spm_time<-,sspm_fit-method Man page
spm_unique_ID Man page
spm_unique_ID,sspm-method Man page
spm_unique_ID,sspm_dataset-method Man page
spm_unique_ID,sspm_fit-method Man page
spm_unique_ID<- Man page
spm_unique_ID<-,sspm-method Man page
spm_unique_ID<-,sspm_dataset-method Man page
spm_unique_ID<-,sspm_fit-method Man page
sspm Man page
sspm,sspm_dataset,list-method Man page
sspm,sspm_dataset,missing-method Man page
sspm,sspm_dataset,sspm_dataset-method Man page
sspm-class Man page
sspm-package Man page
sspm_boundary-class Man page
sspm_dataset-class Man page
sspm_discrete_boundary-class Man page
sspm_fit-class Man page
sspm_formula-class Man page
summary Man page
summary,sspm_fit-method Man page
summary.sspm Man page
suppressAll Source code
tesselate_voronoi Man page Source code
translated_formula Man page
translated_formula,sspm_formula-method Man page
translated_formula<- Man page
translated_formula<-,sspm_formula-method Man page
triangulate_delaunay Man page Source code
pedersen-fisheries-lab/spaspm documentation built on Feb. 16, 2025, 7:39 p.m.

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