API for percyfal/nonmodelr
Utility functions for analysis of non model organism data
| Global functions | |
|---|---|
| .getAssayData | Source code |
| .make.pairs.assay.list | Source code |
| .make.population.assay.list | Source code |
| .pairs.data.frame | Source code |
| .population.data.frame | Source code |
| .readPopoolation2.fet.fst | Source code |
| .readPopoolation2.pwc.rc | Source code |
| .readVarianceSlidingRaw | Source code |
| .valid.WindowedSummarizedExperiment | Source code |
| BcftoolsStats | Man page |
| BcftoolsStats-class | Man page |
| GENOMEList | Man page |
| GENOMEList-class | Man page |
| GRanges_OR_missing-class | Man page |
| SWindows | Man page Source code |
| SWindows-class | Man page |
| VarianceSlidingAssays | Man page Source code |
| Windows | Man page Source code |
| Windows-class | Man page |
| `%||%` | Source code |
| compact | Source code |
| gboxplot | Man page |
| genomewide.stats | Man page |
| genomewide.stats,GENOME-method | Man page |
| get.F_ST.pairwise | Source code |
| get.diversity.between | Source code |
| get.fixed | Source code |
| get.n.sites | Source code |
| get.segregating.sites | Source code |
| get.shared | Source code |
| gplot | Man page |
| gplot.bcftools.stats | Man page Source code |
| identify_outliers | Man page Source code |
| makeCoordinates | Source code |
| manticore | Man page |
| manticore-package | Man page |
| overlapByWindows | Source code |
| plot_region_stats | Man page |
| plot_region_stats,GRanges-method | Man page |
| read.bcftools.stats | Man page Source code |
| readBcftoolsStats | Man page |
| readPopoolation2 | Source code |
| readVarianceSliding | Man page Source code |
| summary.bcftools.stats | Man page Source code |
