readVarianceSliding: readVarianceSliding

In percyfal/nonmodelr: Utility functions for analysis of non model organism data

Description

Read VarianceSliding results from popoolation. This function reads data, adds start and end columns and converts data to a WindowedSummarizedExperiment object.

Usage

readVarianceSliding(filename, measure = "pi", sample, seqinfo = NULL,
  window.size = integer(), ...)

Arguments

filename	filename to parse
measure	measure
sample	sample name
seqinfo	Seqinfo object
window.size	window size

Value

WindowedSummarizedExperiment object of one assay

Author(s)

Per Unneberg

Examples

fn <- system.file("extdata", "popoolation", "dmel.A.D.txt.gz", package = "manticore")
readVarianceSliding(fn, measure = "D", sample = "A")

percyfal/nonmodelr documentation built on Sept. 11, 2019, 10:38 a.m.