VarianceSlidingAssays: VarianceSlidingAssays

In percyfal/nonmodelr: Utility functions for analysis of non model organism data

Description

Read multiple VarianceSliding results from popoolation

Usage

VarianceSlidingAssays(input.df, window.size = NULL, class = NA, ...)

Arguments

input.df	Input data fram that must have columns filename, sample, and measure
window.size	window size; if NULL, entire chromosomes are implied
class	arbitrary classification of windows, e.g. to autosomes, sex chromosomes etc.
...	extra parameters passed to readVarianceSliding

Value

WindowedSummarizedExperiment Assays consist of the requested statistics

Author(s)

Per Unneberg

Examples

dmel.df <- data.frame(filename = list.files(system.file("extdata", "popoolation", package = "manticore"), full.names = TRUE),
                      sample = c(rep("A", 3), rep("B", 3)), measure = rep(c("D", "pi", "theta"), 2))
mrse <- VarianceSlidingAssays(dmel.df)

percyfal/nonmodelr documentation built on Sept. 11, 2019, 10:38 a.m.