inst/readme.md

In perishky/meffonym: DNA methylation exposure and phenotypic archive

Adding a model that 'ships' with this package

Step 1. Create a folder here for the model(s).

Step 2. Add a csv file for the/each new model in the new folder, each file should have two columns, 'pred.var' and 'coef', e.g.

pred.var,coef
"pred.var","coef"
"(Intercept)",0.695507258
"cg00075967",0.12933661
"cg00374717",0.005017857
"cg00864867",1.59976405
"cg00945507",0.056852418

Step 3. Ensure that the file does not have a 'Byte Order Mark' as these will cause problems in some versions of R. This can be achieved at the commmand line as follows:

vi -c ":set nobomb" -c ":wq" new-model.csv

Step 4. Add each new model to the 'models.csv' file in this folder, e.g.

name,tissue,target,publication,source,filename
brenner,blood,mortality,10.1038/ncomms14617,Supplementary Figure 1,brenner/coefs.csv

perishky/meffonym documentation built on Nov. 8, 2024, 8:36 p.m.