peterolah001/BiMiCo: Biomap Microbiome Core methods

Convenience wrappers for commony used 16S metagenomic data processing tasks, based on DADA2 and Phyloseq R packages. Given an input directory of raw fastq files fom 454 or Illumina (paired or single end) reads, provides platform-specific read preprocessing followed by ASV table generation and annotation using the Greengenes database.

install.packages("remotes")
remotes::install_github("peterolah001/BiMiCo")