insp_reads: inspect read trimming results
In peterolah001/BiMiCo: Biomap Microbiome Core methods
View source: R/inspect_read_quality.R
insp_reads R Documentation
inspect read trimming results
Description
Convenience wrapper for DADA2 read processing functions. Generates QC plots from a given fastq file before and after quality control by DADA2.
Usage
insp_reads(readfiles, filtfiles, filenum = 1)
Arguments
readfiles
(Required) Path to single-end 454 demultiplexed fastq files
filtfiles
(Required) Path to quality-filtered fastq files generated by std_(454/illum_SE/illum_PE)_preprocess
filenum
(Optional) Number of fastq read file to plot (numeric).
Examples
insp_reads()
peterolah001/BiMiCo documentation built on April 24, 2023, 3:35 a.m.
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View source: R/inspect_read_quality.R
| insp_reads | R Documentation |
inspect read trimming results
Description
Convenience wrapper for DADA2 read processing functions. Generates QC plots from a given fastq file before and after quality control by DADA2.
Usage
insp_reads(readfiles, filtfiles, filenum = 1)
Arguments
readfiles |
(Required) Path to single-end 454 demultiplexed fastq files |
filtfiles |
(Required) Path to quality-filtered fastq files generated by std_(454/illum_SE/illum_PE)_preprocess |
filenum |
(Optional) Number of fastq read file to plot (numeric). |
Examples
insp_reads()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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