rename_asvs: Convert Phyloseq object with ASVs renamed to more convenient...
In peterolah001/BiMiCo: Biomap Microbiome Core methods
rename_asvs R Documentation
Convert Phyloseq object with ASVs renamed to more convenient shorter form, and actual ASV sequences stored as a DNAStringSet (refseq slot)
Description
Takes as input a phyloseq object and converts otu_table and tax_table rownames to shorter form, stores ASV sequences in refseq slot as 'DNAStringSet'
Usage
rename_asvs(phylo)
Arguments
phylo
(Required) input object of class 'phyloseq'
Examples
rename_asvs()
peterolah001/BiMiCo documentation built on April 24, 2023, 3:35 a.m.
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| rename_asvs | R Documentation |
Convert Phyloseq object with ASVs renamed to more convenient shorter form, and actual ASV sequences stored as a DNAStringSet (refseq slot)
Description
Takes as input a phyloseq object and converts otu_table and tax_table rownames to shorter form, stores ASV sequences in refseq slot as 'DNAStringSet'
Usage
rename_asvs(phylo)
Arguments
phylo |
(Required) input object of class 'phyloseq' |
Examples
rename_asvs()
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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