Man pages for peterolah001/BiMiCo
Biomap Microbiome Core methods
| asgntax | Taxonomy assignment based on external reference database in... |
| asvtab_454 | Create ASV table from filtered 454 reads |
| asvtab_illPE | Create ASV table from filtered PAIRED-END Illumina reads |
| asvtab_illSE | Create ASV table from filtered SINGLE-END Illumina reads |
| create_phylo | Summarize ASV table, taxonomy and phenodata in a phyloseq... |
| insp_reads | inspect read trimming results |
| MicrobIEM_decontamination | Microbiem decontamination by Luise Rauer, TUM Munich |
| prep_454 | standard preprocessor for 454 sequencing reads in BiMiCo... |
| prep_illPE | standard preprocessor for PAIRED-END Illumina reads in BiMiCo... |
| prep_illSE | standard preprocessor for SINGLE-END Illumina reads in BiMiCo... |
| rename_asvs | Convert Phyloseq object with ASVs renamed to more convenient... |
| rm_nonbac | Removal of non-bacterial sequences from a phyloseq object |
| tidy_ASV_tables | tidy_ASV_tables |
