double_reverse_log: Double Reverse Log(x + a) Transformation

In petersonR/bestNormalize: Normalizing Transformation Functions

Double Reverse Log(x + a) Transformation

Description

First reverses scores, then perform a log_b(x) normalization transformation, and then reverses scores again.

Usage

double_reverse_log(
  x,
  b = 10,
  standardize = TRUE,
  eps = diff(range(x, na.rm = TRUE))/10,
  warn = TRUE,
  ...
)

## S3 method for class 'double_reverse_log'
predict(object, newdata = NULL, inverse = FALSE, ...)

## S3 method for class 'double_reverse_log'
print(x, ...)

Arguments

x	A vector to normalize with with x
b	The base of the log (defaults to 10)
standardize	If TRUE, the transformed values are also centered and scaled, such that the transformation attempts a standard normal
eps	The cushion for the transformation range (defaults to 10 percent)
warn	Should a warning result from infinite values?
...	additional arguments
object	an object of class 'double_reverse_log'
newdata	a vector of data to be (potentially reverse) transformed
inverse	if TRUE, performs reverse transformation

Details

double_reverse_log performs a simple log transformation in the context of bestNormalize, such that it creates a transformation that can be estimated and applied to new data via the predict function. The parameter a is essentially estimated by the training set by default (estimated as the minimum possible to some extent epsilon), while the base must be specified beforehand.

Value

A list of class double_reverse_log with elements

x.t	transformed original data
x	original data
mean	mean after transformation but prior to standardization
sd	sd after transformation but prior to standardization
b	estimated base b value
n	number of nonmissing observations
norm_stat	Pearson's P / degrees of freedom
standardize	was the transformation standardized

The predict function returns the numeric value of the transformation performed on new data, and allows for the inverse transformation as well.

Examples

x <- rgamma(100, 1, 1)

double_reverse_log_obj <- double_reverse_log(x)
double_reverse_log_obj
p <- predict(double_reverse_log_obj)
x2 <- predict(double_reverse_log_obj, newdata = p, inverse = TRUE)

all.equal(x2, x)

petersonR/bestNormalize documentation built on March 15, 2024, 9:29 a.m.