Files in pgpmartin/GeneNeighborhood
Analyze the Neighborhood (Upstream/Downstream Neighbors) of Genes
.Rbuildignore
.github/.gitignore
.github/workflows/R-CMD-check.yaml
.gitignore
DESCRIPTION
GeneNeighborhood.Rproj
LICENSE
NAMESPACE
R/Genegr.R
R/analyzeNeighborsOrientation.R
R/annotationCoverageAroundFeatures.R
R/assembleProfiles.R
R/binFeatureProfiles.R
R/dist2Neighbors.R
R/distStats.R
R/distTests.R
R/extendPointPresence.R
R/getAvgProfileWithCI.R
R/getCumulPercentProfiles.R
R/getDistSide.R
R/getGeneNeighborhood.R
R/plotCumulPercentProfile.R
R/plotDistanceDistrib.R
R/plotMetageneAnnotProfile.R
R/plotNeighborsOrientation.R
R/utils.R
R/winsorizeMatrix.R
README.Rmd
README.md
appveyor.yml
codecov.yml
data-raw/Create_Genegr_data.R
data/Genegr.rda
man/Genegr.Rd
man/RleList2matrix.Rd
man/Utest.Rd
man/analyzeNeighborsOrientation.Rd
man/annotationCoverageAroundFeatures.Rd
man/assembleProfiles.Rd
man/binFeatureProfiles.Rd
man/coinIndep.Rd
man/dist2Neighbors.Rd
man/distStats.Rd
man/distTests.Rd
man/extendPointPresence.Rd
man/figures/README-plotCumulPercentProfile-1.png
man/figures/README-plotDistanceDistrib-1.png
man/figures/README-plotMetageneProfile-1.png
man/figures/README-plotOrientationNOS-1.png
man/getAvgProfileWithCI.Rd
man/getCumulPercentProfiles.Rd
man/getDistSide.Rd
man/getGeneNeighborhood.Rd
man/getTES.Rd
man/getTESregion.Rd
man/isBinaryMat.Rd
man/ksfun.Rd
man/matrix2RleList.Rd
man/plotCumulPercentProfile.Rd
man/plotDistanceDistrib.Rd
man/plotMetageneAnnotProfile.Rd
man/plotNeighborsOrientation.Rd
man/profcomp.Rd
man/pvalByGeneSet.Rd
man/resampMed.Rd
man/winsorizeMatrix.Rd
tests/testthat.R
tests/testthat/test-getTES.R
vignettes/.gitignore
vignettes/Fig_getGeneNeighborhood.png
vignettes/Prof.rds
vignettes/geneneighborhood.Rmd
