integrateFIR: Integrate fallback integration regions

In phenomecentre/peakPantheR: Peak Picking and Annotation of High Resolution Experiments

Integrate fallback integration regions

Description

Integrate region defined in FIR if a feature is not found

Usage

integrateFIR(rawSpec, FIR, foundPeakTable, verbose = TRUE)

Arguments

rawSpec	an OnDiskMSnExp-class
FIR	(data.frame) Fallback Integration Regions (FIR) to integrate when a feature is not found. Compounds as row are identical to the targeted features, columns are rtMin (float in seconds), rtMax (float in seconds), mzMin (float), mzMax (float)
foundPeakTable	a data.frame as generated by findTargetFeatures, with features as rows and peak properties as columns. The following columns are mandatory: found, is_filled, mz, mzMin, mzMax, rt, rtMin, rtMax, peakArea, peakAreaRaw, maxIntMeasured, maxIntPredicted.
verbose	(bool) if TRUE message progress

Value

an updated foundPeakTable with FIR integration values

phenomecentre/peakPantheR documentation built on Feb. 29, 2024, 9:07 p.m.