data-raw/syn.R
In philippmuench/HaplotypeDeconstructor: Uses NMF to deconstruct haplotypes from SNP profiles
syn <- as.data.frame(matrix(0,30,10))
syn[1:10, 1:10] <- t(matrix(rep(1:10)/10, 10, 10)) # H1 in all 10 samples for first 10 SNPs with higher AF over time
syn[11:20, 6:8] <- matrix(0.9, 10, 3) # H2
syn[21:30, 1:5] <- matrix(0.5, 10, 6) # H3
usethis::use_data(syn, overwrite = TRUE)
philippmuench/HaplotypeDeconstructor documentation built on May 12, 2023, 10:38 a.m.
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syn <- as.data.frame(matrix(0,30,10))
syn[1:10, 1:10] <- t(matrix(rep(1:10)/10, 10, 10)) # H1 in all 10 samples for first 10 SNPs with higher AF over time
syn[11:20, 6:8] <- matrix(0.9, 10, 3) # H2
syn[21:30, 1:5] <- matrix(0.5, 10, 6) # H3
usethis::use_data(syn, overwrite = TRUE)
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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