Man pages for philliplab/ViralHaplotyper
Viral Haplotyper
| construct_haplotypes | Given a set of sequences, extract the haplotypes. |
| construct_haplotypes_single | Given a set of sequences, extract the haplotypes using the... |
| construct_haplotypes_unique | Given a set of sequences, extract the haplotypes using the... |
| get_all_sequences-methods | Returns all the sequences of a haplotype |
| get_test_AAStringSet | A function that returns a test AAStringSet |
| get_unique_sequence_details-methods | Returns detailed information about the unique sequences in a... |
| get_unique_sequences-methods | Returns the unique sequences of a haplotype |
| Haplotype | The data structure that holds a haplotype |
| number_of_unique_sequences-methods | Returns the count of the unique sequences in the haplotype |
| run_ViralHaplotyper_app | Runs the shiny app for this package |
| total_number_of_sequences-methods | Returns the count of all sequences in the haplotype |
