construct_haplotypes_unique: Given a set of sequences, extract the haplotypes using the...
In philliplab/ViralHaplotyper: Viral Haplotyper
Description
Usage
Arguments
Value
View source: R/construct_haplotypes.R
Description
Each unique sequence will be made a haplotype. The names of all the
identical sequences will be added to the haplotype as well as the number of
copies of this sequence.
Usage
1
construct_haplotypes_unique(seq_data, cluster_params, n_header_letters)
Arguments
seq_data
The input data
cluster_params
A list of input parameters to the clustering
algorithm.
n_header_letters
The number of letters to take from a FASTA header of
one of the sequences and prepend to the haplotype name.
Value
A list of objects of class Haplotype-class
philliplab/ViralHaplotyper documentation built on May 25, 2019, 5:05 a.m.
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Description Usage Arguments Value
View source: R/construct_haplotypes.R
Description
Each unique sequence will be made a haplotype. The names of all the identical sequences will be added to the haplotype as well as the number of copies of this sequence.
Usage
1 | construct_haplotypes_unique(seq_data, cluster_params, n_header_letters)
|
Arguments
seq_data |
The input data |
cluster_params |
A list of input parameters to the clustering algorithm. |
n_header_letters |
The number of letters to take from a FASTA header of one of the sequences and prepend to the haplotype name. |
Value
A list of objects of class Haplotype-class
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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