Man pages for philliplab/hdsResistanceModel
Hybrid Dynamic/Stochastic Model of HIV Resistance Evolution
| calc_growth_time | Computes the time it takes a strain to grow from a lower... |
| compute_fitnessAdjustment | This function computes the fitnessAdjustment |
| compute_newStrainLevel | Compute the newStrainLevel |
| compute_offThreshold | Compute the approximate offThreshold - the value below which... |
| compute_parameters | This function transforms the input parameters into a format... |
| compute_stable_populations | Computes the stable populations that exists in a solved... |
| eventFunc | The event function. Manipulates the state and parameter... |
| findSteadyState | Solves the system for the steady state |
| format_data | Names and reshapes the data so that it is easy to plot |
| get_all_scenarios | Returns all the pre-specified scenarios |
| get_scenario | Retrieves one of the pre-specified scenario specifications |
| get_scenario_names | Retrives the names of all the stored scenarios |
| kBase_steady_state_relationship | Express the relationship steady state = f(kBase) under... |
| make_scenario_ui | This function produces the shiny components that can be... |
| plot_component | Plots a component of the system |
| plot_system | Plots the system or an component of the system |
| rootFunc | This function searched for roots in the system |
| run_hdsResistanceModel_app | Runs the shiny app for this package |
| run_system | Run the whole system |
| scenario | Checks input list for problems and throw an error or returns... |
| ss_tc_AccuTams_1_2_s4 | Solved System for tc_AccuTams_1_2 with seed value 4 |
| ss_tc_Simple_1_0_s4 | Solved System for tc_Simple_1_0 with seed value 4 |
| ss_tc_Simple_1_2_s4 | Solved System for tc_Simple_1_2 with seed value 4 |
| stateFunc | The state function of the system. |
| steady_state_kBase_relationship | Express the relationship kBase = f(steady state) under... |
| toggle_mutation_matrix | Toggles the mutation matrix to reflect mutation and... |
| treatment_ui_from_scenario | Constructs the treatment part of the ui from a scenario |
