In philmikejones/thesis: hrsim: A spatial microsimulation analysis of health inequalities and health resilience

knitr::opts_chunk$set(echo    = FALSE,
                      warning = FALSE,
                      message = FALSE,
                      cache   = FALSE)

options("digits" = 2)
options("scipen" = 9)

set.seed(42)

dir.create("figures/", showWarnings = FALSE)
dir.create("figures/cache/", showWarnings = FALSE)

latest_wave <- "f_"

source("R/packages.R")

source("R/logit_functions.R")
source("R/validation_funcs.R")
source("R/population_funcs.R")
source("R/geocode.R")

source("data-raw/0-prep-understanding-society.R")
source("data-raw/1-construct-shapefiles.R")
source("data-raw/2-simulate-pilot.R")
source("data-raw/3-simulate-resilience.R")

load("data/hawaii.RData")
load("data/kauai.RData")

load("data/bem.RData")
load("data/care_homes.RData")
load("data/doctors.RData")
load("data/leisure_centres.RData")
load("data/gs.RData")
load("data/don_comm.RData")
load("data/don_oa.RData")
load("data/don_oa_cent.RData")
load("data/don_lsoa.RData")
load("data/don_msoa.RData")
load("data/don_outline.RData")
load("data/don_context.RData")
load("data/gb_outline.RData")
load("data/lads.RData")
load("data/sy_county.RData")
load("data/yh_region.RData")

load("data/us.RData")

load("data/pilot_con.RData")
load("data/pilot_ind.RData")
load("data/pilot_oa_ext.RData")
load("data/pilot_oa_int.RData")
load("data/pilot_con_lsoa.RData")
load("data/pilot_lsoa_ext.RData")
load("data/pilot_con_msoa.RData")
load("data/pilot_msoa_ext.RData")

load("data/res_con.RData")
load("data/res_ind.RData")
load("data/res_weights_ext.RData")
load("data/res_weights_int.RData")

source("data-raw/4-calcs-mult-datasets.R")

source("data-raw/5-figures.R")

# automatically create a bib database for R packages
knitr::write_bib(c(
  .packages(),
  'bookdown', 'knitr', 'rmarkdown',
  'readr', 'testthat', 'tidyr'),
  'packages.bib')

philmikejones/thesis documentation built on May 31, 2019, 2:50 p.m.