skyline.multi.coalescentIntervals: Multifurcating skyline plot estimate of effective population...
In phoscheit/LambdaSkyline: Demographic Analysis of Multifurcating Phylogenies
View source: R/skyline_estimation.R
Description
Main estimation function : takes as input a coalescentIntervals object, as well as the alpha parameter of the Beta coalescent, and the grouping parameter
epsilon, and returns a skyline object, along with its log-likelihood
Usage
1
skyline.multi.coalescentIntervals(Inter, alpha, epsilon = 0)
Arguments
Inter
A coalescent interval object
alpha
The alpha parameter of the Beta(2-alpha,alpha)-coalescent
epsilon
Grouping parameter, as defined originally in (Strimmer, Pybus 2001)
phoscheit/LambdaSkyline documentation built on May 3, 2019, 8:36 p.m.
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View source: R/skyline_estimation.R
Description
Main estimation function : takes as input a coalescentIntervals object, as well as the alpha parameter of the Beta coalescent, and the grouping parameter epsilon, and returns a skyline object, along with its log-likelihood
Usage
1 | skyline.multi.coalescentIntervals(Inter, alpha, epsilon = 0)
|
Arguments
Inter |
A coalescent interval object |
alpha |
The alpha parameter of the Beta(2-alpha,alpha)-coalescent |
epsilon |
Grouping parameter, as defined originally in (Strimmer, Pybus 2001) |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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