set.aln.file: Sets the alignment file, whether nt or aa. Also sets the...
In phraber/pixelgram: Pixel View with Accompanying Phylogram of Sequence Alignment
Description
Usage
Arguments
Value
Description
Sets the alignment file, whether nt or aa. Also sets the refseq.
Usage
1
2
set.aln.file(P, f, file_type = "aa", alignment_format = "fasta",
pngs2o = NULL)
Arguments
P
pixelgram object
f
alignment file name
file_type
Specifies alignment file type. Must be "aa", "nt", or "codon".
alignment_format
Alignment file format, one "fasta", "clustal", "phylip", "msf", or "mase"
pngs2o
Switch to mark asparagines (N) in PNG motifs as O.
Value
updated pixelgram object
phraber/pixelgram documentation built on May 25, 2019, 6:02 a.m.
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Description Usage Arguments Value
Description
Sets the alignment file, whether nt or aa. Also sets the refseq.
Usage
1 2 | set.aln.file(P, f, file_type = "aa", alignment_format = "fasta",
pngs2o = NULL)
|
Arguments
P |
pixelgram object |
f |
alignment file name |
file_type |
Specifies alignment file type. Must be "aa", "nt", or "codon". |
alignment_format |
Alignment file format, one "fasta", "clustal", "phylip", "msf", or "mase" |
pngs2o |
Switch to mark asparagines (N) in PNG motifs as O. |
Value
updated pixelgram object
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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