School of ecology package for teaching ecological tasks, algorithms and model fitting.
This package contains functions and utilities for analyses in ecology and biogeography, including:
Basic functions for forestry and vegetation analysis:
basal_area
, foldasp
, htld
,
pdir
Outlier analysis:
outlier_multi
, outlier_uni
Plots:
plot_heatmap
, plot_loess
,
plot_lm
, utils_*
Plot utilities:
set_par
, colvec
and allies
Text utilities:
clean_text
Matrix manipulation and summaries:
mx_collapse
, mx_diversity
,
mx_profile
, mx_describe
,
mx_dropzero
, mx_rbind_all
,
mx_valid
, reshape_w
Data transformations:
asin_sqrt
, genlogtrans
,
pseudo_log
, standardize
Basic statistics:
cv
, sem
, rmse
and allies
Ordination methods (reluctantly):
ord_bc
, ord_nms
, ord_pca
Pairwise multiple comparisons for PERMANOVA:
permanova_pairwise
Blocked indicator species analysis:
indval
Niche overlap:
overlap
Datasets:
smoky
, braun
, veg
,
foods
, bison
, oakwoods
...and many others.
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