ecole-package: School of Ecology Package for Teaching Ecological Tasks,...

In phytomosaic/ecole: ecole: School of Ecology Package

Description

School of ecology package for teaching ecological tasks, algorithms and model fitting.

Details

This package contains functions and utilities for analyses in ecology and biogeography, including:

Basic functions for forestry and vegetation analysis:
basal_area, foldasp, htld, pdir

Outlier analysis:
outlier_multi, outlier_uni

Plots:
plot_heatmap, plot_loess, plot_lm, utils_*

Plot utilities:
set_par, colvec and allies

Text utilities:
clean_text

Matrix manipulation and summaries:
mx_collapse, mx_diversity, mx_profile, mx_describe, mx_dropzero, mx_rbind_all, mx_valid, reshape_w

Data transformations:
asin_sqrt, genlogtrans, pseudo_log, standardize

Basic statistics:
cv, sem, rmse and allies

Ordination methods (reluctantly):
ord_bc, ord_nms, ord_pca

Pairwise multiple comparisons for PERMANOVA:
permanova_pairwise

Blocked indicator species analysis:
indval

Niche overlap:
overlap

Datasets:
smoky, braun, veg, foods, bison, oakwoods

...and many others.

phytomosaic/ecole documentation built on Jan. 2, 2022, 11:24 p.m.