get_probe_overlaps: Calculate 3'-subsequence overlap between a set of probes
In pjhop/DNAmCrosshyb: DNAmCrosshyb
Description
Usage
Arguments
Value
View source: R/get_probe_overlaps.R
Description
Calculate 3'-subsequence overlap between a set of probes
Usage
1
get_probe_overlaps(probes)
Arguments
probes
Probes to test (450k/EPIC)
Value
A data frame with one row for each match and .. columns
Probe_Index
Probe ID
Bead_Index
Bead ID: Probe ID with '_methylated' or '_unmethylated' appended for type I probes
Probe_Target
Probe ID
Bead_Target
Bead ID: Probe ID with '_methylated' or '_unmethylated' appended for type I probes
overlap
overlap in bp
mismatch_pos
position of mismatch (bp from 3'end of probe), NA if exact match
pjhop/DNAmCrosshyb documentation built on June 23, 2021, 1:04 p.m.
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Description Usage Arguments Value
View source: R/get_probe_overlaps.R
Description
Calculate 3'-subsequence overlap between a set of probes
Usage
1 | get_probe_overlaps(probes)
|
Arguments
probes |
Probes to test (450k/EPIC) |
Value
A data frame with one row for each match and .. columns
Probe_Index |
Probe ID |
Bead_Index |
Bead ID: Probe ID with '_methylated' or '_unmethylated' appended for type I probes |
Probe_Target |
Probe ID |
Bead_Target |
Bead ID: Probe ID with '_methylated' or '_unmethylated' appended for type I probes |
overlap |
overlap in bp |
mismatch_pos |
position of mismatch (bp from 3'end of probe), NA if exact match |
R Package Documentation
Browse R Packages
We want your feedback!
Note that we can't provide technical support on individual packages. You should contact the package authors for that.
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