locusplot: Locusplot

In pjhop/DNAmCrosshyb: DNAmCrosshyb

Description

Locusplot

Usage

locusplot(
  cpg,
  stats,
  windowsize,
  threshold = NULL,
  significance_line = FALSE,
  highlight = TRUE,
  text_size = 13,
  point_size = 2.5
)

Arguments

cpg	CpG-site to plot
stats	data.frame containing association p-values. Should contain a 'Probe' and a 'p' column.
windowsize	Size (bp) of the window surrounding the CpG-site that should be plotted.
threshold	Significance threshold. By default will use bonferonni threshold, using the number of probes in the 'stats' file.
significance_line	Plot a significane line(TRUE/FALSE)?
highlight	Highlight significant sites?
text_size	Text size.
point_size	Point size.

pjhop/DNAmCrosshyb documentation built on June 23, 2021, 1:04 p.m.