Description Usage Arguments Details Value Author(s)
Visualize the results of SHC analysis as an annotated dendrogram with significant branches highlighted
1 2 3 
x 
a 
groups 
a vector specifying group labels for the clustered objects.
The vector should be in the same order as the rows of the original
data matrix. If specified, color blocks will be placed along the
bottom of the dendrogram. Useful when the samples have a priori known
groupi behavior. (default = 
use_labs 
a boolean specifyin whether rowlabels should be added as
text along the bottom of the dendrogram (default = 
hang 
a double value corresponding to the 
fwer 
a boolean specifying whether the FWER control procedure of
Meinshausen et al. 2010 should be used. (default = 
alpha 
a double between 0 and 1 specifying the significance cutoff. If

ci_idx 
a numeric value between 1 and 
ci_emp 
a logical value specifying whether to use the empirical
pvalue from the CI based on 
... 
other parameters to be used by the function 
This function makes use of dendrogram plotting functions made available through the ggdendro package which provides a ggplot2like grammer for working with dendrograms.
ggplot
object containing a dendrogram annotated by the results of the
corresponding shc
analysis
Patrick Kimes
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