KeggModuleConn: The connector class to KEGG Pathway database.

KeggModuleConnR Documentation

The connector class to KEGG Pathway database.

Description

The connector class to KEGG Pathway database.

The connector class to KEGG Pathway database.

Details

This is a concrete connector class. It must never be instantiated directly, but instead be instantiated through the factory BiodbFactory. Only specific methods are described here. See super classes for the description of inherited methods.

Super classes

biodb::BiodbConnBase -> biodb::BiodbConn -> biodbKegg::KeggConn -> KeggModuleConn

Methods

Public methods

Inherited methods

Method new()

New instance initializer. Connector classes must not be instantiated directly. Instead, you must use the createConn() method of the factory class.

Usage
KeggModuleConn$new(...)
Arguments
...

All parameters are passed to the super class initializer.

Returns

Nothing.


Method clone()

The objects of this class are cloneable with this method.

Usage
KeggModuleConn$clone(deep = FALSE)
Arguments
deep

Whether to make a deep clone.

See Also

KeggConn.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Create a connector
conn <- mybiodb$getFactory()$createConn('kegg.module')

# Get an entry
e <- conn$getEntry('M00009')

# Terminate instance.
mybiodb$terminate()


pkrog/biodbKegg documentation built on Oct. 1, 2022, 6:27 p.m.