KeggOrthologyEntry: KEGG Orthology entry class.

In pkrog/biodbKegg: biodbKegg, a library for connecting to the KEGG Database

KEGG Orthology entry class.

Description

This is the class entry for KEGG Orthology database.

Super classes

biodb::BiodbEntry -> biodb::BiodbTxtEntry -> biodbKegg::KeggEntry -> KeggOrthologyEntry

Methods

Public methods

• KeggOrthologyEntry$clone()

Inherited methods

• biodb::BiodbEntry$appendFieldValue()
• biodb::BiodbEntry$cloneInstance()
• biodb::BiodbEntry$computeFields()
• biodb::BiodbEntry$fieldHasBasicClass()
• biodb::BiodbEntry$getBiodb()
• biodb::BiodbEntry$getDbClass()
• biodb::BiodbEntry$getField()
• biodb::BiodbEntry$getFieldCardinality()
• biodb::BiodbEntry$getFieldClass()
• biodb::BiodbEntry$getFieldDef()
• biodb::BiodbEntry$getFieldNames()
• biodb::BiodbEntry$getFieldValue()
• biodb::BiodbEntry$getFieldsAsDataframe()
• biodb::BiodbEntry$getFieldsAsJson()
• biodb::BiodbEntry$getFieldsByType()
• biodb::BiodbEntry$getId()
• biodb::BiodbEntry$getName()
• biodb::BiodbEntry$getParent()
• biodb::BiodbEntry$hasField()
• biodb::BiodbEntry$isNew()
• biodb::BiodbEntry$makesRefToEntry()
• biodb::BiodbEntry$parentIsAConnector()
• biodb::BiodbEntry$parseContent()
• biodb::BiodbEntry$print()
• biodb::BiodbEntry$removeField()
• biodb::BiodbEntry$setField()
• biodb::BiodbEntry$setFieldValue()
• biodb::BiodbTxtEntry$initialize()

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Method clone()

The objects of this class are cloneable with this method.

Usage

KeggOrthologyEntry$clone(deep = FALSE)

Arguments

deep

Whether to make a deep clone.

Examples

# Create an instance with default settings:
mybiodb <- biodb::newInst()

# Create a connector
conn <- mybiodb$getFactory()$createConn('kegg.orthology')

# Get an entry
e <- conn$getEntry('K12668')

# Terminate instance.
mybiodb$terminate()

pkrog/biodbKegg documentation built on Oct. 1, 2022, 6:27 p.m.