yftDMraw: Yellowfin Tuna Stomach Contents Matrix Raw Data
In pkuhnert/diet: Performs an analysis of diet data using univariate trees
yftDMraw R Documentation
Yellowfin Tuna Stomach Contents Matrix Raw Data
Description
Yellowfin tuna (YFT) were captured by purse-seine fishing vessels in the eastern
tropical Pacific (ETP) between 16 August 2003 and 16 November 2005.
Usage
yftDMraw
Format
A data frame with 571 observations on the following 40 variables.
TripSetNoA unique number representing the purse-seine vessel's Trip and Set number
TripSetPredNoA unique number representing the purse-seine vessel's Trip and Set number, and the YFT sample number
DateDate YFT was captured
QuarterQuarter in which YFT was captured
YearYear in which YFT was captured
LatLatitude coordinates where YFT was captured
LonLongitude coordinates where YFT was captured
SSTSea-surface temperature at location where YFT was captured, measured in degrees C
LengthLength, measured as fork length, of YFT in mm
PredSppPredator Species Name
FullnessVisual estimate of YFT stomach fullness, expressed as a percentage
ArgonautidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
BalistidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
BivalviaCA prey item, identified to Class level of taxonomy, found in YFT stomach contents
BramidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
CarangidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ClupeidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
CoryphaenidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
DecapodaOA prey item, identified to Order level of taxonomy, found in YFT stomach contents
EngraulidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ExocoetidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
GalatheidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
GastropodaCA prey item, identified to Class level of taxonomy, found in YFT stomach contents
GempylidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
HemiramphidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
HemisquillidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
LoliginidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
MyctophidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
NomeidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
OctopodidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
OmmastrephidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
OstraciidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
PenaeidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
PhosichthyidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
PortunidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ScombridaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
SquillidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
StomatopodaOA prey item, identified to Order level of taxonomy, found in YFT stomach contents
TetraodontidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ThysanoteuthidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
Details
Yellowfin Tuna were sampled onboard the vessels by observers of the Inter-American Tropical
Tuna Commission (IATTC, 2004). Fish were randomly subsampled from purse-seine sets immediately after capture,
and date, position, and sea-surface temperature (SST) were recorded for each set that yielded samples. Observers
measured fork length of the fish, removed samples of white muscle tissue from the dorsal musculature adjacent
to the second dorsal fin and stored them at about -20 degrees C until processed further in the lab.
Data is in matrix format where each row represents one YFT.
References
Olson RJ, Popp BN, Graham BS, Lopez-Ibarra GA, Galvan-Magana F, Lennert-Cody CE,
Bocanegra-Castillo N, Wallsgrove NJ, Gier E, Alatorre-Ramirez V, Balance LT, Fry B (2010)
Food web inferences of stable isotope spatial patterns in copepods and yellowfin tuna in the
pelagic eastern Pacific Ocean. Prog Oceanogr.
IATTC, 2004. Annual Report of the Inter-American Tropical Tuna Commission, 2003. Inter-American
Tropical Tuna Commission, pp. 98.
pkuhnert/diet documentation built on June 10, 2025, 2:59 a.m.
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Yellowfin Tuna Stomach Contents Matrix Raw Data
Description
Yellowfin tuna (YFT) were captured by purse-seine fishing vessels in the eastern tropical Pacific (ETP) between 16 August 2003 and 16 November 2005.
Usage
yftDMraw
Format
A data frame with 571 observations on the following 40 variables.
TripSetNoA unique number representing the purse-seine vessel's Trip and Set number
TripSetPredNoA unique number representing the purse-seine vessel's Trip and Set number, and the YFT sample number
DateDate YFT was captured
QuarterQuarter in which YFT was captured
YearYear in which YFT was captured
LatLatitude coordinates where YFT was captured
LonLongitude coordinates where YFT was captured
SSTSea-surface temperature at location where YFT was captured, measured in degrees C
LengthLength, measured as fork length, of YFT in mm
PredSppPredator Species Name
FullnessVisual estimate of YFT stomach fullness, expressed as a percentage
ArgonautidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
BalistidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
BivalviaCA prey item, identified to Class level of taxonomy, found in YFT stomach contents
BramidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
CarangidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ClupeidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
CoryphaenidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
DecapodaOA prey item, identified to Order level of taxonomy, found in YFT stomach contents
EngraulidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ExocoetidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
GalatheidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
GastropodaCA prey item, identified to Class level of taxonomy, found in YFT stomach contents
GempylidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
HemiramphidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
HemisquillidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
LoliginidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
MyctophidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
NomeidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
OctopodidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
OmmastrephidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
OstraciidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
PenaeidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
PhosichthyidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
PortunidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ScombridaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
SquillidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
StomatopodaOA prey item, identified to Order level of taxonomy, found in YFT stomach contents
TetraodontidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
ThysanoteuthidaeA prey item, identified to Family level of taxonomy, found in YFT stomach contents
Details
Yellowfin Tuna were sampled onboard the vessels by observers of the Inter-American Tropical Tuna Commission (IATTC, 2004). Fish were randomly subsampled from purse-seine sets immediately after capture, and date, position, and sea-surface temperature (SST) were recorded for each set that yielded samples. Observers measured fork length of the fish, removed samples of white muscle tissue from the dorsal musculature adjacent to the second dorsal fin and stored them at about -20 degrees C until processed further in the lab. Data is in matrix format where each row represents one YFT.
References
Olson RJ, Popp BN, Graham BS, Lopez-Ibarra GA, Galvan-Magana F, Lennert-Cody CE, Bocanegra-Castillo N, Wallsgrove NJ, Gier E, Alatorre-Ramirez V, Balance LT, Fry B (2010) Food web inferences of stable isotope spatial patterns in copepods and yellowfin tuna in the pelagic eastern Pacific Ocean. Prog Oceanogr.
IATTC, 2004. Annual Report of the Inter-American Tropical Tuna Commission, 2003. Inter-American Tropical Tuna Commission, pp. 98.
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